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Mutant Information

Mutant Name	FN4203-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4203-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7072490 T-A Hetero INTERGENIC
SBS Chr1 7515493 T-A Homo INTRON
SBS Chr1 7849040 G-A Homo INTERGENIC
SBS Chr1 7849041 C-A Homo INTERGENIC
SBS Chr1 7849042 C-A Homo INTERGENIC
SBS Chr1 12081549 G-C Homo INTRON
SBS Chr1 15507391 G-T Hetero INTERGENIC
SBS Chr1 15507392 A-T Hetero INTERGENIC
SBS Chr1 20454515 G-A Homo INTERGENIC
SBS Chr2 19206605 T-A Homo INTERGENIC
SBS Chr2 20492512 C-T Homo INTERGENIC
SBS Chr2 22206461 C-T Homo INTRON
SBS Chr2 26699957 T-C Homo INTERGENIC
SBS Chr3 5720359 G-A Hetero INTRON
SBS Chr3 21086834 G-A Hetero INTERGENIC
SBS Chr3 28645922 C-G Homo INTERGENIC
SBS Chr3 36302412 C-T Hetero INTRON
SBS Chr4 7502966 G-A Hetero INTERGENIC
SBS Chr4 8603692 T-C Homo INTERGENIC
SBS Chr4 19562779 C-A Hetero INTERGENIC
SBS Chr4 19562780 A-T Hetero INTERGENIC
SBS Chr5 10004997 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g089602
SBS Chr6 15935216 T-C Homo INTERGENIC
SBS Chr6 22140642 A-T Homo INTERGENIC
SBS Chr7 985340 A-G Hetero INTERGENIC
SBS Chr7 3595418 G-A Homo INTERGENIC
SBS Chr7 6829204 G-A Homo SYNONYMOUS_CODING
SBS Chr7 14398041 T-A Hetero INTERGENIC
SBS Chr7 23001338 G-A Hetero INTERGENIC
SBS Chr8 28187820 T-C Hetero INTERGENIC
SBS Chr9 1540341 C-T Homo INTERGENIC
SBS Chr9 13178003 G-A Homo INTERGENIC
SBS Chr9 15753157 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g112100
SBS Chr10 4688103 T-G Hetero INTERGENIC
SBS Chr10 14236461 G-A Hetero UTR_3_PRIME
SBS Chr11 10286948 A-T Hetero INTERGENIC
SBS Chr12 2899430 T-C Hetero INTERGENIC
SBS Chr12 3464991 G-T Hetero INTERGENIC
SBS Chr12 5553100 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 889123 889126 3
Deletion Chr8 1729180 1729185 5 OsKitaake08g226900
Deletion Chr6 3277036 3277038 2 OsKitaake06g045800
Deletion Chr7 4570139 4570151 12 OsKitaake07g056800
Deletion Chr3 5475604 5475608 4
Deletion Chr3 6132185 6132209 24
Deletion Chr1 7228880 7228888 8
Deletion Chr5 7548022 7548023 1
Deletion Chr1 8546843 8546855 12
Deletion Chr6 8855409 8855429 20
Deletion Chr9 9215872 9215885 13
Deletion Chr8 9584048 9584063 15
Deletion Chr7 11099075 11099080 5
Deletion Chr1 11481633 11481642 9
Deletion Chr12 12091578 12091589 11
Deletion Chr11 14134679 14134704 25 OsKitaake11g117900
Deletion Chr6 15730875 15730885 10 OsKitaake06g153050
Deletion Chr9 16719240 16719248 8
Deletion Chr8 18206049 18206055 6
Deletion Chr2 20492534 20492535 1
Deletion Chr2 20989273 20989277 4
Deletion Chr1 21746638 21746642 4
Deletion Chr1 30786912 30786913 1
Deletion Chr1 43433001 43593000 159999 30

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12427674 12427676 1
Insertion Chr7 168281 168285 3
Insertion Chr12 14779926 14779928 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7072490	T-A	Hetero	INTERGENIC
SBS	Chr1	7515493	T-A	Homo	INTRON
SBS	Chr1	7849040	G-A	Homo	INTERGENIC
SBS	Chr1	7849041	C-A	Homo	INTERGENIC
SBS	Chr1	7849042	C-A	Homo	INTERGENIC
SBS	Chr1	12081549	G-C	Homo	INTRON
SBS	Chr1	15507391	G-T	Hetero	INTERGENIC
SBS	Chr1	15507392	A-T	Hetero	INTERGENIC
SBS	Chr1	20454515	G-A	Homo	INTERGENIC
SBS	Chr2	19206605	T-A	Homo	INTERGENIC
SBS	Chr2	20492512	C-T	Homo	INTERGENIC
SBS	Chr2	22206461	C-T	Homo	INTRON
SBS	Chr2	26699957	T-C	Homo	INTERGENIC
SBS	Chr3	5720359	G-A	Hetero	INTRON
SBS	Chr3	21086834	G-A	Hetero	INTERGENIC
SBS	Chr3	28645922	C-G	Homo	INTERGENIC
SBS	Chr3	36302412	C-T	Hetero	INTRON
SBS	Chr4	7502966	G-A	Hetero	INTERGENIC
SBS	Chr4	8603692	T-C	Homo	INTERGENIC
SBS	Chr4	19562779	C-A	Hetero	INTERGENIC
SBS	Chr4	19562780	A-T	Hetero	INTERGENIC
SBS	Chr5	10004997	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g089602
SBS	Chr6	15935216	T-C	Homo	INTERGENIC
SBS	Chr6	22140642	A-T	Homo	INTERGENIC
SBS	Chr7	985340	A-G	Hetero	INTERGENIC
SBS	Chr7	3595418	G-A	Homo	INTERGENIC
SBS	Chr7	6829204	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	14398041	T-A	Hetero	INTERGENIC
SBS	Chr7	23001338	G-A	Hetero	INTERGENIC
SBS	Chr8	28187820	T-C	Hetero	INTERGENIC
SBS	Chr9	1540341	C-T	Homo	INTERGENIC
SBS	Chr9	13178003	G-A	Homo	INTERGENIC
SBS	Chr9	15753157	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g112100
SBS	Chr10	4688103	T-G	Hetero	INTERGENIC
SBS	Chr10	14236461	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	10286948	A-T	Hetero	INTERGENIC
SBS	Chr12	2899430	T-C	Hetero	INTERGENIC
SBS	Chr12	3464991	G-T	Hetero	INTERGENIC
SBS	Chr12	5553100	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	889123	889126	3
Deletion	Chr8	1729180	1729185	5	OsKitaake08g226900
Deletion	Chr6	3277036	3277038	2	OsKitaake06g045800
Deletion	Chr7	4570139	4570151	12	OsKitaake07g056800
Deletion	Chr3	5475604	5475608	4
Deletion	Chr3	6132185	6132209	24
Deletion	Chr1	7228880	7228888	8
Deletion	Chr5	7548022	7548023	1
Deletion	Chr1	8546843	8546855	12
Deletion	Chr6	8855409	8855429	20
Deletion	Chr9	9215872	9215885	13
Deletion	Chr8	9584048	9584063	15
Deletion	Chr7	11099075	11099080	5
Deletion	Chr1	11481633	11481642	9
Deletion	Chr12	12091578	12091589	11
Deletion	Chr11	14134679	14134704	25	OsKitaake11g117900
Deletion	Chr6	15730875	15730885	10	OsKitaake06g153050
Deletion	Chr9	16719240	16719248	8
Deletion	Chr8	18206049	18206055	6
Deletion	Chr2	20492534	20492535	1
Deletion	Chr2	20989273	20989277	4
Deletion	Chr1	21746638	21746642	4
Deletion	Chr1	30786912	30786913	1
Deletion	Chr1	43433001	43593000	159999	30

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes