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Mutant Information

Mutant Name	FN4204-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4204-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12355034 T-A Hetero INTERGENIC
SBS Chr1 27027003 T-C Hetero INTERGENIC
SBS Chr1 30660461 G-T Hetero INTERGENIC
SBS Chr2 875129 A-T Hetero INTERGENIC
SBS Chr2 14273082 T-A Hetero INTERGENIC
SBS Chr2 18007472 C-A Hetero INTERGENIC
SBS Chr2 22380518 T-A Hetero INTERGENIC
SBS Chr2 24492807 G-A Homo SYNONYMOUS_CODING
SBS Chr2 25657404 A-G Hetero INTERGENIC
SBS Chr3 5285095 G-A Hetero INTRON
SBS Chr3 5285100 A-C Hetero INTRON
SBS Chr3 10903115 T-G Hetero INTERGENIC
SBS Chr3 11245563 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g154400
SBS Chr3 19809041 C-G Hetero INTERGENIC
SBS Chr3 23192646 A-G Hetero INTERGENIC
SBS Chr3 33901932 C-G Hetero INTERGENIC
SBS Chr4 657710 G-A Hetero INTERGENIC
SBS Chr4 1341806 T-C Hetero INTERGENIC
SBS Chr4 10286333 T-C Hetero INTERGENIC
SBS Chr4 12709697 C-A Hetero INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr4 28553735 A-G Hetero INTRON
SBS Chr4 32732061 T-A Hetero INTERGENIC
SBS Chr4 35410180 G-A Hetero INTERGENIC
SBS Chr5 3114546 T-A Hetero INTERGENIC
SBS Chr5 8833860 C-T Hetero INTRON
SBS Chr5 20128339 T-A Homo INTERGENIC
SBS Chr5 27560512 T-C Homo INTERGENIC
SBS Chr6 4303870 A-G Hetero INTERGENIC
SBS Chr6 8280647 C-T Hetero INTERGENIC
SBS Chr6 14782642 C-A Hetero INTRON
SBS Chr7 14819561 T-G Homo INTERGENIC
SBS Chr7 19812879 C-T Hetero INTERGENIC
SBS Chr7 20416848 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 2244894 G-A Homo INTERGENIC
SBS Chr8 12264920 A-G Hetero INTERGENIC
SBS Chr8 17651719 G-A Hetero INTERGENIC
SBS Chr8 17651720 G-A Hetero INTERGENIC
SBS Chr8 18985092 A-T Hetero INTERGENIC
SBS Chr8 27789218 C-T Hetero INTERGENIC
SBS Chr9 5510680 A-G Homo INTERGENIC
SBS Chr9 5522102 G-A Homo INTERGENIC
SBS Chr10 5818152 T-C Homo INTERGENIC
SBS Chr10 6224219 A-G Hetero INTERGENIC
SBS Chr10 12215325 C-T Hetero INTERGENIC
SBS Chr10 22644532 C-G Hetero INTERGENIC
SBS Chr11 21036531 G-A Hetero INTERGENIC
SBS Chr11 22875388 T-C Hetero INTERGENIC
SBS Chr12 5349926 C-T Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC
SBS Chr12 19074466 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g141500
SBS Chr12 19878516 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3955034 3955055 21
Deletion Chr6 5983399 5983404 5
Deletion Chr7 6332912 6332918 6
Deletion Chr2 7005226 7005229 3
Deletion Chr5 10889225 10889228 3
Deletion Chr11 13413255 13413256 1
Deletion Chr9 14053567 14053605 38
Deletion Chr8 14167001 14185000 17999 OsKitaake08g111900
Deletion Chr8 14191001 14207000 15999 OsKitaake08g112000
Deletion Chr8 14278618 14278622 4
Deletion Chr1 16207001 16255000 47999 OsKitaake01g174900
Deletion Chr9 18497031 18497039 8
Deletion Chr2 19355001 19441000 85999 10
Deletion Chr6 22602865 22602870 5
Deletion Chr4 24981912 24981917 5
Deletion Chr11 25422981 25422989 8
Deletion Chr1 32516053 32516056 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11619249 11619253 3
Insertion Chr4 23967637 23967639 1
Insertion Chr5 8019107 8019111 3
Insertion Chr4 4457804 4457806 1
Insertion Chr10 5594179 5594182 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 19358019 20022321 OsKitaake02g189500
Inversion Chr2 19437088 20022355

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 14186581 Chr6 29485594 OsKitaake06g273400
Translocation Chr8 14190942 Chr6 29485587 OsKitaake06g273400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12355034	T-A	Hetero	INTERGENIC
SBS	Chr1	27027003	T-C	Hetero	INTERGENIC
SBS	Chr1	30660461	G-T	Hetero	INTERGENIC
SBS	Chr2	875129	A-T	Hetero	INTERGENIC
SBS	Chr2	14273082	T-A	Hetero	INTERGENIC
SBS	Chr2	18007472	C-A	Hetero	INTERGENIC
SBS	Chr2	22380518	T-A	Hetero	INTERGENIC
SBS	Chr2	24492807	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	25657404	A-G	Hetero	INTERGENIC
SBS	Chr3	5285095	G-A	Hetero	INTRON
SBS	Chr3	5285100	A-C	Hetero	INTRON
SBS	Chr3	10903115	T-G	Hetero	INTERGENIC
SBS	Chr3	11245563	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g154400
SBS	Chr3	19809041	C-G	Hetero	INTERGENIC
SBS	Chr3	23192646	A-G	Hetero	INTERGENIC
SBS	Chr3	33901932	C-G	Hetero	INTERGENIC
SBS	Chr4	657710	G-A	Hetero	INTERGENIC
SBS	Chr4	1341806	T-C	Hetero	INTERGENIC
SBS	Chr4	10286333	T-C	Hetero	INTERGENIC
SBS	Chr4	12709697	C-A	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr4	28553735	A-G	Hetero	INTRON
SBS	Chr4	32732061	T-A	Hetero	INTERGENIC
SBS	Chr4	35410180	G-A	Hetero	INTERGENIC
SBS	Chr5	3114546	T-A	Hetero	INTERGENIC
SBS	Chr5	8833860	C-T	Hetero	INTRON
SBS	Chr5	20128339	T-A	Homo	INTERGENIC
SBS	Chr5	27560512	T-C	Homo	INTERGENIC
SBS	Chr6	4303870	A-G	Hetero	INTERGENIC
SBS	Chr6	8280647	C-T	Hetero	INTERGENIC
SBS	Chr6	14782642	C-A	Hetero	INTRON
SBS	Chr7	14819561	T-G	Homo	INTERGENIC
SBS	Chr7	19812879	C-T	Hetero	INTERGENIC
SBS	Chr7	20416848	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	2244894	G-A	Homo	INTERGENIC
SBS	Chr8	12264920	A-G	Hetero	INTERGENIC
SBS	Chr8	17651719	G-A	Hetero	INTERGENIC
SBS	Chr8	17651720	G-A	Hetero	INTERGENIC
SBS	Chr8	18985092	A-T	Hetero	INTERGENIC
SBS	Chr8	27789218	C-T	Hetero	INTERGENIC
SBS	Chr9	5510680	A-G	Homo	INTERGENIC
SBS	Chr9	5522102	G-A	Homo	INTERGENIC
SBS	Chr10	5818152	T-C	Homo	INTERGENIC
SBS	Chr10	6224219	A-G	Hetero	INTERGENIC
SBS	Chr10	12215325	C-T	Hetero	INTERGENIC
SBS	Chr10	22644532	C-G	Hetero	INTERGENIC
SBS	Chr11	21036531	G-A	Hetero	INTERGENIC
SBS	Chr11	22875388	T-C	Hetero	INTERGENIC
SBS	Chr12	5349926	C-T	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC
SBS	Chr12	19074466	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g141500
SBS	Chr12	19878516	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3955034	3955055	21
Deletion	Chr6	5983399	5983404	5
Deletion	Chr7	6332912	6332918	6
Deletion	Chr2	7005226	7005229	3
Deletion	Chr5	10889225	10889228	3
Deletion	Chr11	13413255	13413256	1
Deletion	Chr9	14053567	14053605	38
Deletion	Chr8	14167001	14185000	17999	OsKitaake08g111900
Deletion	Chr8	14191001	14207000	15999	OsKitaake08g112000
Deletion	Chr8	14278618	14278622	4
Deletion	Chr1	16207001	16255000	47999	OsKitaake01g174900
Deletion	Chr9	18497031	18497039	8
Deletion	Chr2	19355001	19441000	85999	10
Deletion	Chr6	22602865	22602870	5
Deletion	Chr4	24981912	24981917	5
Deletion	Chr11	25422981	25422989	8
Deletion	Chr1	32516053	32516056	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	19358019	20022321	OsKitaake02g189500
Inversion	Chr2	19437088	20022355

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes