Search Kitaake

Mutant Information

Mutant Name	FN4206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4206-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7075934 T-G Hetero INTERGENIC
SBS Chr1 11071758 A-T Hetero INTERGENIC
SBS Chr1 35920827 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g380600
SBS Chr1 35921111 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g380600
SBS Chr2 15956313 C-T Homo INTERGENIC
SBS Chr3 16149037 T-A Homo INTRON
SBS Chr3 16864547 T-A Homo INTERGENIC
SBS Chr3 16864558 G-A Homo INTERGENIC
SBS Chr3 25701029 T-C Hetero INTRON
SBS Chr3 27682607 C-T Hetero INTERGENIC
SBS Chr3 29108925 C-A Homo INTERGENIC
SBS Chr3 33592475 G-A Homo INTERGENIC
SBS Chr4 5907727 T-C Hetero INTERGENIC
SBS Chr4 9270238 C-T Homo INTERGENIC
SBS Chr4 11409612 G-A Hetero INTERGENIC
SBS Chr4 12382971 G-A Hetero INTERGENIC
SBS Chr4 24602006 C-G Homo INTERGENIC
SBS Chr4 25572722 C-A Homo INTRON
SBS Chr4 31420057 C-T Homo INTERGENIC
SBS Chr5 7745595 C-T Hetero INTERGENIC
SBS Chr5 10250188 A-G Hetero INTERGENIC
SBS Chr7 9791781 G-A Hetero INTERGENIC
SBS Chr7 18263862 G-T Hetero INTERGENIC
SBS Chr7 22298005 A-G Homo INTERGENIC
SBS Chr8 2544493 C-T Hetero INTERGENIC
SBS Chr8 13991717 C-T Hetero INTERGENIC
SBS Chr8 16494472 G-A Hetero INTERGENIC
SBS Chr8 26378120 A-T Hetero INTERGENIC
SBS Chr8 27127123 A-C Hetero INTRON
SBS Chr9 961996 T-C Hetero INTERGENIC
SBS Chr9 1214016 C-T Hetero UTR_5_PRIME
SBS Chr9 2332062 T-C Hetero INTERGENIC
SBS Chr11 863509 G-C Hetero INTERGENIC
SBS Chr11 28220038 C-T Homo INTRON
SBS Chr12 7112708 C-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 44657 44666 9
Deletion Chr7 821001 1296000 474999 80
Deletion Chr11 2933653 2933658 5 OsKitaake11g041500
Deletion Chr3 6994794 6994796 2
Deletion Chr1 7339941 7339942 1
Deletion Chr2 9298786 9298798 12 OsKitaake02g115600
Deletion Chr5 11143816 11143827 11
Deletion Chr7 11984659 11984660 1
Deletion Chr7 12362272 12362276 4
Deletion Chr11 12481270 12481279 9
Deletion Chr11 15648110 15648132 22 OsKitaake11g125900
Deletion Chr11 15793864 15793876 12
Deletion Chr7 18392247 18392253 6
Deletion Chr12 21187910 21187911 1
Deletion Chr12 22251595 22251596 1
Deletion Chr3 26846001 27064000 217999 22
Deletion Chr1 43096690 43096696 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1553060 1553063 2
Insertion Chr2 36612697 36612700 2
Insertion Chr5 17119400 17119403 2
Insertion Chr8 7856211 7856214 2
Insertion Chr2 14377552 14377554 1 OsKitaake02g155500

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 13662340 14387750
Inversion Chr6 13662341 14387753
Inversion Chr11 26759449 26802701
Inversion Chr3 27110557 27556599 OsKitaake03g279300
Inversion Chr3 27415911 27556593

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 25876400 Chr3 27110540 OsKitaake03g279300
Translocation Chr7 25876412 Chr3 27110009 OsKitaake03g279300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7075934	T-G	Hetero	INTERGENIC
SBS	Chr1	11071758	A-T	Hetero	INTERGENIC
SBS	Chr1	35920827	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g380600
SBS	Chr1	35921111	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g380600
SBS	Chr2	15956313	C-T	Homo	INTERGENIC
SBS	Chr3	16149037	T-A	Homo	INTRON
SBS	Chr3	16864547	T-A	Homo	INTERGENIC
SBS	Chr3	16864558	G-A	Homo	INTERGENIC
SBS	Chr3	25701029	T-C	Hetero	INTRON
SBS	Chr3	27682607	C-T	Hetero	INTERGENIC
SBS	Chr3	29108925	C-A	Homo	INTERGENIC
SBS	Chr3	33592475	G-A	Homo	INTERGENIC
SBS	Chr4	5907727	T-C	Hetero	INTERGENIC
SBS	Chr4	9270238	C-T	Homo	INTERGENIC
SBS	Chr4	11409612	G-A	Hetero	INTERGENIC
SBS	Chr4	12382971	G-A	Hetero	INTERGENIC
SBS	Chr4	24602006	C-G	Homo	INTERGENIC
SBS	Chr4	25572722	C-A	Homo	INTRON
SBS	Chr4	31420057	C-T	Homo	INTERGENIC
SBS	Chr5	7745595	C-T	Hetero	INTERGENIC
SBS	Chr5	10250188	A-G	Hetero	INTERGENIC
SBS	Chr7	9791781	G-A	Hetero	INTERGENIC
SBS	Chr7	18263862	G-T	Hetero	INTERGENIC
SBS	Chr7	22298005	A-G	Homo	INTERGENIC
SBS	Chr8	2544493	C-T	Hetero	INTERGENIC
SBS	Chr8	13991717	C-T	Hetero	INTERGENIC
SBS	Chr8	16494472	G-A	Hetero	INTERGENIC
SBS	Chr8	26378120	A-T	Hetero	INTERGENIC
SBS	Chr8	27127123	A-C	Hetero	INTRON
SBS	Chr9	961996	T-C	Hetero	INTERGENIC
SBS	Chr9	1214016	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	2332062	T-C	Hetero	INTERGENIC
SBS	Chr11	863509	G-C	Hetero	INTERGENIC
SBS	Chr11	28220038	C-T	Homo	INTRON
SBS	Chr12	7112708	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	44657	44666	9
Deletion	Chr7	821001	1296000	474999	80
Deletion	Chr11	2933653	2933658	5	OsKitaake11g041500
Deletion	Chr3	6994794	6994796	2
Deletion	Chr1	7339941	7339942	1
Deletion	Chr2	9298786	9298798	12	OsKitaake02g115600
Deletion	Chr5	11143816	11143827	11
Deletion	Chr7	11984659	11984660	1
Deletion	Chr7	12362272	12362276	4
Deletion	Chr11	12481270	12481279	9
Deletion	Chr11	15648110	15648132	22	OsKitaake11g125900
Deletion	Chr11	15793864	15793876	12
Deletion	Chr7	18392247	18392253	6
Deletion	Chr12	21187910	21187911	1
Deletion	Chr12	22251595	22251596	1
Deletion	Chr3	26846001	27064000	217999	22
Deletion	Chr1	43096690	43096696	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13662340	14387750
Inversion	Chr6	13662341	14387753
Inversion	Chr11	26759449	26802701
Inversion	Chr3	27110557	27556599	OsKitaake03g279300
Inversion	Chr3	27415911	27556593

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes