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Mutant Information |
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Mutant Name | FN4208-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4208-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 23891270 | G-A | Homo | INTERGENIC | |
SBS | Chr1 | 31832630 | A-G | Homo | INTERGENIC | |
SBS | Chr2 | 23477203 | G-A | Hetero | INTERGENIC | |
SBS | Chr2 | 27022244 | T-G | Hetero | INTERGENIC | |
SBS | Chr2 | 32683299 | T-A | Hetero | UTR_5_PRIME | |
SBS | Chr3 | 9931242 | A-T | Hetero | INTRON | |
SBS | Chr3 | 9931243 | G-T | Hetero | INTRON | |
SBS | Chr3 | 16765405 | G-A | Homo | INTERGENIC | |
SBS | Chr3 | 20790630 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 26569121 | G-T | Homo | INTERGENIC | |
SBS | Chr3 | 33804006 | G-C | Hetero | UTR_5_PRIME | |
SBS | Chr3 | 36437937 | C-A | Hetero | INTERGENIC | |
SBS | Chr4 | 17172413 | T-C | Homo | INTERGENIC | |
SBS | Chr4 | 19927672 | C-T | Homo | INTERGENIC | |
SBS | Chr4 | 24852057 | G-T | Homo | INTERGENIC | |
SBS | Chr4 | 25780437 | T-A | Hetero | INTERGENIC | |
SBS | Chr4 | 25944077 | A-T | Hetero | INTERGENIC | |
SBS | Chr4 | 32180825 | G-A | Homo | INTERGENIC | |
SBS | Chr5 | 20418860 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 22604560 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g185700 |
SBS | Chr6 | 11284095 | T-C | Hetero | INTRON | |
SBS | Chr6 | 13125275 | T-C | Hetero | INTERGENIC | |
SBS | Chr6 | 19395262 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 7556740 | C-A | Homo | INTERGENIC | |
SBS | Chr7 | 10206390 | C-T | Homo | INTERGENIC | |
SBS | Chr7 | 10755532 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 22324301 | G-C | Homo | INTERGENIC | |
SBS | Chr8 | 3975087 | T-C | Hetero | INTRON | |
SBS | Chr8 | 18055263 | T-C | Homo | INTRON | |
SBS | Chr10 | 5100942 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 13566250 | A-T | Homo | INTERGENIC | |
SBS | Chr11 | 10707721 | A-T | Hetero | INTERGENIC | |
SBS | Chr12 | 12571124 | C-A | Hetero | INTERGENIC | |
SBS | Chr12 | 23973280 | A-G | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr5 | 5240877 | 5240881 | 4 | |
Deletion | Chr7 | 5873486 | 5873520 | 34 | |
Deletion | Chr5 | 18755197 | 18755222 | 25 | |
Deletion | Chr3 | 19182157 | 19182160 | 3 | |
Deletion | Chr1 | 20303001 | 20308000 | 4999 | OsKitaake01g199600 |
Deletion | Chr3 | 21397207 | 21397210 | 3 | |
Deletion | Chr7 | 21515067 | 21515069 | 2 | |
Deletion | Chr10 | 23281001 | 23335000 | 53999 | 12 |
Deletion | Chr8 | 26413880 | 26414025 | 145 |
Insertions: 5
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr10 | 23282907 | 23300880 | OsKitaake10g197200 |
Translocations: 8
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr5 | 6334769 | Chr2 | 34741534 | |
Translocation | Chr5 | 6334778 | Chr2 | 34787475 | |
Translocation | Chr10 | 19970717 | Chr4 | 19886467 | |
Translocation | Chr10 | 19970720 | Chr4 | 21486741 | |
Translocation | Chr10 | 23282697 | Chr2 | 34787481 | OsKitaake10g197200 |
Translocation | Chr10 | 23300866 | Chr6 | 7134145 | OsKitaake06g091800 |
Translocation | Chr10 | 23334457 | Chr6 | 7134704 | OsKitaake06g091800 |
Translocation | Chr10 | 23335051 | Chr2 | 34789613 |