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Mutant Information 

Mutant NameFN4208-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4208-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr123891270G-AHomoINTERGENIC
SBS  Chr131832630A-GHomoINTERGENIC
SBS  Chr223477203G-AHeteroINTERGENIC
SBS  Chr227022244T-GHeteroINTERGENIC
SBS  Chr232683299T-AHeteroUTR_5_PRIME
SBS  Chr39931242A-THeteroINTRON
SBS  Chr39931243G-THeteroINTRON
SBS  Chr316765405G-AHomoINTERGENIC
SBS  Chr320790630C-THeteroINTERGENIC
SBS  Chr326569121G-THomoINTERGENIC
SBS  Chr333804006G-CHeteroUTR_5_PRIME
SBS  Chr336437937C-AHeteroINTERGENIC
SBS  Chr417172413T-CHomoINTERGENIC
SBS  Chr419927672C-THomoINTERGENIC
SBS  Chr424852057G-THomoINTERGENIC
SBS  Chr425780437T-AHeteroINTERGENIC
SBS  Chr425944077A-THeteroINTERGENIC
SBS  Chr432180825G-AHomoINTERGENIC
SBS  Chr520418860C-THeteroINTERGENIC
SBS  Chr522604560C-THomoNON_SYNONYMOUS_CODINGOsKitaake05g185700
SBS  Chr611284095T-CHeteroINTRON
SBS  Chr613125275T-CHeteroINTERGENIC
SBS  Chr619395262G-AHeteroINTERGENIC
SBS  Chr77556740C-AHomoINTERGENIC
SBS  Chr710206390C-THomoINTERGENIC
SBS  Chr710755532G-AHeteroINTERGENIC
SBS  Chr722324301G-CHomoINTERGENIC
SBS  Chr83975087T-CHeteroINTRON
SBS  Chr818055263T-CHomoINTRON
SBS  Chr105100942C-THeteroINTERGENIC
SBS  Chr1013566250A-THomoINTERGENIC
SBS  Chr1110707721A-THeteroINTERGENIC
SBS  Chr1212571124C-AHeteroINTERGENIC
SBS  Chr1223973280A-GHeteroINTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr5524087752408814
Deletion  Chr75873486587352034
Deletion  Chr5187551971875522225
Deletion  Chr319182157191821603
Deletion  Chr120303001203080004999OsKitaake01g199600
Deletion  Chr321397207213972103
Deletion  Chr721515067215150692
Deletion  Chr1023281001233350005399912
Deletion  Chr82641388026414025145

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr328060420280604243
Insertion  Chr5678562067856287
Insertion  Chr630800106308001114
Insertion  Chr12405229340522962
Insertion  Chr1217598870175988732

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr102328290723300880OsKitaake10g197200

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr56334769Chr234741534
Translocation  Chr56334778Chr234787475
Translocation  Chr1019970717Chr419886467
Translocation  Chr1019970720Chr421486741
Translocation  Chr1023282697Chr234787481OsKitaake10g197200
Translocation  Chr1023300866Chr67134145OsKitaake06g091800
Translocation  Chr1023334457Chr67134704OsKitaake06g091800
Translocation  Chr1023335051Chr234789613