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| Mutant Information |
|---|
| Mutant Name | FN421-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN421-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 38176621 | A-G | Homo | INTRON | |
| SBS | Chr3 | 11815765 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11815766 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 21981444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23037673 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g248900 |
| SBS | Chr4 | 10538278 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 3848854 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8538232 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17533211 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24708093 | C-T | Hetero | START_GAINED | |
| SBS | Chr6 | 8203825 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 21406401 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 28959280 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29765730 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23879361 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 3554658 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 13318503 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 14589343 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 15883335 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7675270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13112783 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 327265 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 8657861 | A-G | Homo | INTRON | |
| SBS | Chr11 | 8661268 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 12076002 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 21226433 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21226434 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22382775 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9251930 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14773345 | A-G | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1206934 | 1206945 | 11 | |
| Deletion | Chr6 | 2529908 | 2529909 | 1 | |
| Deletion | Chr5 | 4819689 | 4819697 | 8 | |
| Deletion | Chr2 | 7335043 | 7335044 | 1 | OsKitaake02g097900 |
| Deletion | Chr9 | 9843001 | 9935000 | 91999 | 2 |
| Deletion | Chr5 | 11724787 | 11724788 | 1 | |
| Deletion | Chr6 | 12882510 | 12882512 | 2 | |
| Deletion | Chr6 | 13757455 | 13757466 | 11 | |
| Deletion | Chr7 | 15671721 | 15671731 | 10 | |
| Deletion | Chr6 | 16848389 | 16848396 | 7 | |
| Deletion | Chr12 | 23156846 | 23156847 | 1 | |
| Deletion | Chr3 | 32421391 | 32421396 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 4528057 | 4528060 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 22669099 | 22974049 | OsKitaake10g192400 |
| Inversion | Chr10 | 22669102 | 22974051 | OsKitaake10g192400 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 6232409 | Chr2 | 3219934 | 2 |
| Translocation | Chr4 | 6232411 | Chr2 | 3219503 | 2 |
| Translocation | Chr6 | 19574802 | Chr4 | 7834340 | |
| Translocation | Chr6 | 19575312 | Chr4 | 7834337 |