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Mutant Information

Mutant Name	FN4221-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4221-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4370019 A-G Hetero INTERGENIC
SBS Chr1 5247386 A-T Hetero INTERGENIC
SBS Chr1 17494603 A-T Homo INTERGENIC
SBS Chr1 31035355 G-A Hetero INTERGENIC
SBS Chr1 32683067 A-G Hetero INTERGENIC
SBS Chr1 35735010 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 36584638 A-T Hetero INTERGENIC
SBS Chr3 386860 G-T Homo INTRON
SBS Chr3 6395372 C-A Hetero INTRON
SBS Chr3 11689589 C-A Hetero INTERGENIC
SBS Chr3 12163782 T-C Hetero INTERGENIC
SBS Chr3 19407792 G-A Hetero INTERGENIC
SBS Chr3 23338236 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g251300
SBS Chr4 14138580 A-T Homo INTERGENIC
SBS Chr4 19136931 T-A Hetero INTERGENIC
SBS Chr4 21081239 C-A Hetero INTERGENIC
SBS Chr4 33418735 T-A Hetero INTERGENIC
SBS Chr5 17190472 G-A Homo INTERGENIC
SBS Chr5 27265911 C-G Hetero INTERGENIC
SBS Chr6 9591541 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g113000
SBS Chr6 13721104 A-G Hetero INTERGENIC
SBS Chr6 29061877 A-G Hetero INTERGENIC
SBS Chr6 29586654 G-A Homo INTERGENIC
SBS Chr7 1474693 G-C Hetero UTR_3_PRIME
SBS Chr7 2191747 T-A Hetero UTR_3_PRIME
SBS Chr7 4009010 A-G Hetero INTERGENIC
SBS Chr7 6161005 G-A Hetero INTERGENIC
SBS Chr7 7675100 C-T Hetero INTERGENIC
SBS Chr7 10049103 A-G Hetero INTERGENIC
SBS Chr7 20033813 C-T Hetero INTERGENIC
SBS Chr7 24233559 G-A Hetero INTRON
SBS Chr7 27585481 T-A Hetero INTRON
SBS Chr8 2894288 G-A Hetero INTERGENIC
SBS Chr8 6953316 T-A Homo INTERGENIC
SBS Chr9 3259660 C-T Hetero INTERGENIC
SBS Chr10 5382022 C-G Homo INTERGENIC
SBS Chr11 11314394 C-A Hetero INTERGENIC
SBS Chr11 12129121 A-T Hetero INTRON
SBS Chr11 13279626 G-T Hetero INTERGENIC
SBS Chr11 24901857 G-T Homo INTERGENIC
SBS Chr12 11327687 T-C Hetero INTERGENIC
SBS Chr12 21718783 C-T Hetero INTERGENIC
SBS Chr12 22144480 A-T Hetero START_GAINED

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 670949 670975 26
Deletion Chr11 4514585 4514586 1
Deletion Chr5 5088001 5098000 9999 OsKitaake05g056700
Deletion Chr5 5143001 5150000 6999 OsKitaake05g057300
Deletion Chr4 5630267 5630269 2
Deletion Chr6 5884514 5884515 1
Deletion Chr5 10377470 10377483 13
Deletion Chr11 12479813 12479822 9
Deletion Chr10 14271714 14271723 9
Deletion Chr1 17183567 17183887 320
Deletion Chr5 19031800 19031808 8
Deletion Chr1 21391578 21391580 2
Deletion Chr2 24049896 24049897 1
Deletion Chr2 25115091 25115092 1
Deletion Chr4 26538530 26538531 1
Deletion Chr4 31907001 31977000 69999 6
Deletion Chr1 40626898 40626906 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 9724155 9724157 1
Insertion Chr8 2334934 2334937 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 26899897 26983964

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 5150097 Chr2 26983961
Translocation Chr5 5150751 Chr2 26899890
Translocation Chr11 21629400 Chr9 16385504 OsKitaake11g171100
Translocation Chr11 21630386 Chr9 16385502

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4370019	A-G	Hetero	INTERGENIC
SBS	Chr1	5247386	A-T	Hetero	INTERGENIC
SBS	Chr1	17494603	A-T	Homo	INTERGENIC
SBS	Chr1	31035355	G-A	Hetero	INTERGENIC
SBS	Chr1	32683067	A-G	Hetero	INTERGENIC
SBS	Chr1	35735010	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36584638	A-T	Hetero	INTERGENIC
SBS	Chr3	386860	G-T	Homo	INTRON
SBS	Chr3	6395372	C-A	Hetero	INTRON
SBS	Chr3	11689589	C-A	Hetero	INTERGENIC
SBS	Chr3	12163782	T-C	Hetero	INTERGENIC
SBS	Chr3	19407792	G-A	Hetero	INTERGENIC
SBS	Chr3	23338236	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g251300
SBS	Chr4	14138580	A-T	Homo	INTERGENIC
SBS	Chr4	19136931	T-A	Hetero	INTERGENIC
SBS	Chr4	21081239	C-A	Hetero	INTERGENIC
SBS	Chr4	33418735	T-A	Hetero	INTERGENIC
SBS	Chr5	17190472	G-A	Homo	INTERGENIC
SBS	Chr5	27265911	C-G	Hetero	INTERGENIC
SBS	Chr6	9591541	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g113000
SBS	Chr6	13721104	A-G	Hetero	INTERGENIC
SBS	Chr6	29061877	A-G	Hetero	INTERGENIC
SBS	Chr6	29586654	G-A	Homo	INTERGENIC
SBS	Chr7	1474693	G-C	Hetero	UTR_3_PRIME
SBS	Chr7	2191747	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	4009010	A-G	Hetero	INTERGENIC
SBS	Chr7	6161005	G-A	Hetero	INTERGENIC
SBS	Chr7	7675100	C-T	Hetero	INTERGENIC
SBS	Chr7	10049103	A-G	Hetero	INTERGENIC
SBS	Chr7	20033813	C-T	Hetero	INTERGENIC
SBS	Chr7	24233559	G-A	Hetero	INTRON
SBS	Chr7	27585481	T-A	Hetero	INTRON
SBS	Chr8	2894288	G-A	Hetero	INTERGENIC
SBS	Chr8	6953316	T-A	Homo	INTERGENIC
SBS	Chr9	3259660	C-T	Hetero	INTERGENIC
SBS	Chr10	5382022	C-G	Homo	INTERGENIC
SBS	Chr11	11314394	C-A	Hetero	INTERGENIC
SBS	Chr11	12129121	A-T	Hetero	INTRON
SBS	Chr11	13279626	G-T	Hetero	INTERGENIC
SBS	Chr11	24901857	G-T	Homo	INTERGENIC
SBS	Chr12	11327687	T-C	Hetero	INTERGENIC
SBS	Chr12	21718783	C-T	Hetero	INTERGENIC
SBS	Chr12	22144480	A-T	Hetero	START_GAINED

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	670949	670975	26
Deletion	Chr11	4514585	4514586	1
Deletion	Chr5	5088001	5098000	9999	OsKitaake05g056700
Deletion	Chr5	5143001	5150000	6999	OsKitaake05g057300
Deletion	Chr4	5630267	5630269	2
Deletion	Chr6	5884514	5884515	1
Deletion	Chr5	10377470	10377483	13
Deletion	Chr11	12479813	12479822	9
Deletion	Chr10	14271714	14271723	9
Deletion	Chr1	17183567	17183887	320
Deletion	Chr5	19031800	19031808	8
Deletion	Chr1	21391578	21391580	2
Deletion	Chr2	24049896	24049897	1
Deletion	Chr2	25115091	25115092	1
Deletion	Chr4	26538530	26538531	1
Deletion	Chr4	31907001	31977000	69999	6
Deletion	Chr1	40626898	40626906	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	26899897	26983964

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes