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Mutant Information

Mutant Name	FN4224-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4224-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2504958 G-T Homo INTERGENIC
SBS Chr1 2504959 C-T Homo INTERGENIC
SBS Chr1 14041272 C-A Homo INTERGENIC
SBS Chr1 19263997 T-A Homo INTERGENIC
SBS Chr1 21966438 C-G Hetero INTRON
SBS Chr1 30281492 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g298400
SBS Chr2 7334094 A-G Hetero INTERGENIC
SBS Chr2 10595186 C-G Hetero INTERGENIC
SBS Chr2 18443564 T-A Hetero INTERGENIC
SBS Chr2 29647973 T-A Homo INTERGENIC
SBS Chr2 30207657 A-G Homo INTERGENIC
SBS Chr2 34222651 T-A Homo INTERGENIC
SBS Chr3 2718333 G-A Hetero INTERGENIC
SBS Chr3 7505987 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g104300
SBS Chr3 31522124 G-T Homo INTERGENIC
SBS Chr4 2311420 C-G Homo INTERGENIC
SBS Chr4 16333546 G-A Hetero INTERGENIC
SBS Chr4 28756912 G-A Hetero INTERGENIC
SBS Chr5 15398121 G-A Hetero INTERGENIC
SBS Chr5 22002685 G-A Hetero INTERGENIC
SBS Chr5 25184651 G-A Hetero INTERGENIC
SBS Chr6 1782029 G-A Homo INTERGENIC
SBS Chr6 4942871 G-A Hetero INTERGENIC
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr6 14342888 A-G Hetero INTERGENIC
SBS Chr6 14348284 C-A Hetero INTERGENIC
SBS Chr7 11580501 G-A Homo INTERGENIC
SBS Chr7 24450996 C-T Hetero INTERGENIC
SBS Chr7 26107618 C-T Hetero INTERGENIC
SBS Chr8 7691293 T-C Hetero INTERGENIC
SBS Chr8 8654627 T-C Hetero INTRON
SBS Chr8 17738159 G-C Hetero INTRON
SBS Chr9 6699763 G-A Hetero INTERGENIC
SBS Chr9 7453509 G-A Hetero INTERGENIC
SBS Chr9 14340603 C-T Hetero INTERGENIC
SBS Chr10 9596996 T-G Hetero INTERGENIC
SBS Chr10 9919491 A-G Hetero INTERGENIC
SBS Chr10 18583259 G-A Homo INTERGENIC
SBS Chr11 12830799 C-G Hetero INTERGENIC
SBS Chr11 13471505 C-G Hetero INTERGENIC
SBS Chr11 26764166 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 922376 922385 9
Deletion Chr9 1044291 1044292 1
Deletion Chr3 6209141 6209143 2
Deletion Chr3 7528934 7528936 2
Deletion Chr4 8260045 8260054 9
Deletion Chr11 8339383 8339410 27
Deletion Chr8 10438340 10438342 2
Deletion Chr11 10800963 10800964 1
Deletion Chr12 11052007 11052010 3
Deletion Chr7 13725001 13730000 4999
Deletion Chr8 15122001 15216000 93999 11
Deletion Chr4 16954938 16954943 5
Deletion Chr10 20691679 20691686 7
Deletion Chr5 25459001 25545000 85999 12
Deletion Chr7 29184149 29184153 4
Deletion Chr1 34831654 34831663 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10417263 10417266 2
Insertion Chr3 4499896 4499899 2
Insertion Chr4 30058269 30058272 2
Insertion Chr6 24846096 24846099 2
Insertion Chr12 4604518 4604524 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5598064 6583109
Inversion Chr9 6491748 6496045
Inversion Chr9 7026458 7044471 OsKitaake09g041000
Inversion Chr9 14409033 14808667 OsKitaake09g097950

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7026461 Chr5 24703382
Translocation Chr9 7029800 Chr5 24703378 OsKitaake09g040700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2504958	G-T	Homo	INTERGENIC
SBS	Chr1	2504959	C-T	Homo	INTERGENIC
SBS	Chr1	14041272	C-A	Homo	INTERGENIC
SBS	Chr1	19263997	T-A	Homo	INTERGENIC
SBS	Chr1	21966438	C-G	Hetero	INTRON
SBS	Chr1	30281492	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g298400
SBS	Chr2	7334094	A-G	Hetero	INTERGENIC
SBS	Chr2	10595186	C-G	Hetero	INTERGENIC
SBS	Chr2	18443564	T-A	Hetero	INTERGENIC
SBS	Chr2	29647973	T-A	Homo	INTERGENIC
SBS	Chr2	30207657	A-G	Homo	INTERGENIC
SBS	Chr2	34222651	T-A	Homo	INTERGENIC
SBS	Chr3	2718333	G-A	Hetero	INTERGENIC
SBS	Chr3	7505987	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g104300
SBS	Chr3	31522124	G-T	Homo	INTERGENIC
SBS	Chr4	2311420	C-G	Homo	INTERGENIC
SBS	Chr4	16333546	G-A	Hetero	INTERGENIC
SBS	Chr4	28756912	G-A	Hetero	INTERGENIC
SBS	Chr5	15398121	G-A	Hetero	INTERGENIC
SBS	Chr5	22002685	G-A	Hetero	INTERGENIC
SBS	Chr5	25184651	G-A	Hetero	INTERGENIC
SBS	Chr6	1782029	G-A	Homo	INTERGENIC
SBS	Chr6	4942871	G-A	Hetero	INTERGENIC
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr6	14342888	A-G	Hetero	INTERGENIC
SBS	Chr6	14348284	C-A	Hetero	INTERGENIC
SBS	Chr7	11580501	G-A	Homo	INTERGENIC
SBS	Chr7	24450996	C-T	Hetero	INTERGENIC
SBS	Chr7	26107618	C-T	Hetero	INTERGENIC
SBS	Chr8	7691293	T-C	Hetero	INTERGENIC
SBS	Chr8	8654627	T-C	Hetero	INTRON
SBS	Chr8	17738159	G-C	Hetero	INTRON
SBS	Chr9	6699763	G-A	Hetero	INTERGENIC
SBS	Chr9	7453509	G-A	Hetero	INTERGENIC
SBS	Chr9	14340603	C-T	Hetero	INTERGENIC
SBS	Chr10	9596996	T-G	Hetero	INTERGENIC
SBS	Chr10	9919491	A-G	Hetero	INTERGENIC
SBS	Chr10	18583259	G-A	Homo	INTERGENIC
SBS	Chr11	12830799	C-G	Hetero	INTERGENIC
SBS	Chr11	13471505	C-G	Hetero	INTERGENIC
SBS	Chr11	26764166	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	922376	922385	9
Deletion	Chr9	1044291	1044292	1
Deletion	Chr3	6209141	6209143	2
Deletion	Chr3	7528934	7528936	2
Deletion	Chr4	8260045	8260054	9
Deletion	Chr11	8339383	8339410	27
Deletion	Chr8	10438340	10438342	2
Deletion	Chr11	10800963	10800964	1
Deletion	Chr12	11052007	11052010	3
Deletion	Chr7	13725001	13730000	4999
Deletion	Chr8	15122001	15216000	93999	11
Deletion	Chr4	16954938	16954943	5
Deletion	Chr10	20691679	20691686	7
Deletion	Chr5	25459001	25545000	85999	12
Deletion	Chr7	29184149	29184153	4
Deletion	Chr1	34831654	34831663	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5598064	6583109
Inversion	Chr9	6491748	6496045
Inversion	Chr9	7026458	7044471	OsKitaake09g041000
Inversion	Chr9	14409033	14808667	OsKitaake09g097950

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes