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Mutant Information

Mutant Name	FN4229-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4229-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11956258 G-A Hetero INTERGENIC
SBS Chr1 13702347 G-A Hetero INTRON
SBS Chr1 23031462 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g219400
SBS Chr1 27766299 C-T Hetero INTERGENIC
SBS Chr2 8266568 C-T Homo INTERGENIC
SBS Chr2 8266570 T-C Homo INTERGENIC
SBS Chr2 10702271 T-C Homo INTERGENIC
SBS Chr2 12780375 C-T Hetero INTERGENIC
SBS Chr2 25191824 G-A Homo INTERGENIC
SBS Chr2 29600936 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g298700
SBS Chr3 19200523 T-G Hetero INTERGENIC
SBS Chr3 19200524 T-A Hetero INTERGENIC
SBS Chr3 20418737 C-T Hetero INTERGENIC
SBS Chr3 27842534 C-T Hetero INTERGENIC
SBS Chr3 31527695 T-A Hetero INTERGENIC
SBS Chr4 3965294 G-A Hetero INTERGENIC
SBS Chr4 4281878 G-A Hetero INTERGENIC
SBS Chr4 5845589 C-G Hetero INTERGENIC
SBS Chr4 10242308 C-T Hetero INTERGENIC
SBS Chr4 20978902 A-G Hetero INTERGENIC
SBS Chr4 22506270 T-A Hetero INTERGENIC
SBS Chr4 34034161 A-G Hetero INTRON
SBS Chr4 35867513 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g307300
SBS Chr5 2399107 T-C Homo INTRON
SBS Chr5 2679954 G-A Hetero INTERGENIC
SBS Chr5 3065475 C-T Homo INTRON
SBS Chr5 5360308 G-A Homo INTERGENIC
SBS Chr6 7714165 C-T Homo INTERGENIC
SBS Chr6 15311216 A-T Hetero INTERGENIC
SBS Chr7 741913 T-C Hetero INTERGENIC
SBS Chr7 9257928 G-A Homo INTERGENIC
SBS Chr7 13965337 T-C Homo INTERGENIC
SBS Chr7 22423584 A-G Homo INTERGENIC
SBS Chr8 8376238 G-A Homo INTERGENIC
SBS Chr8 9821529 C-A Homo NON_SYNONYMOUS_CODING OsKitaake08g091600
SBS Chr8 19066034 A-G Homo UTR_5_PRIME
SBS Chr8 24607859 C-T Hetero INTERGENIC
SBS Chr9 1192148 A-G Homo INTRON
SBS Chr9 6510174 C-T Hetero INTERGENIC
SBS Chr9 7559011 T-A Homo INTERGENIC
SBS Chr9 7573703 A-T Hetero INTERGENIC
SBS Chr9 10579161 G-A Homo INTERGENIC
SBS Chr9 11559604 G-A Homo SYNONYMOUS_CODING
SBS Chr9 18909869 T-A Hetero INTRON
SBS Chr10 2810925 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g023100
SBS Chr10 8968450 C-T Hetero INTERGENIC
SBS Chr10 23538751 T-C Hetero INTERGENIC
SBS Chr12 1703991 C-T Hetero INTRON
SBS Chr12 5557652 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1681067 1681073 6
Deletion Chr3 3508126 3508128 2
Deletion Chr8 9266532 9266541 9
Deletion Chr5 9530085 9530094 9
Deletion Chr3 9944487 9944493 6
Deletion Chr9 10501001 10542000 40999 4
Deletion Chr4 10507868 10507870 2
Deletion Chr3 12180001 12212000 31999 OsKitaake03g164900
Deletion Chr2 17431686 17431687 1
Deletion Chr5 17587811 17587812 1
Deletion Chr3 19450001 19461000 10999
Deletion Chr7 23630155 23630156 1
Deletion Chr4 27127448 27127449 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6259230 6259233 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10510395 10579718
Inversion Chr9 10542346 10579724
Inversion Chr4 11375454 11962333
Inversion Chr3 19449504 19553249
Inversion Chr3 19461307 19553260
Inversion Chr3 31495610 31498155 OsKitaake03g331900
Inversion Chr3 31572078 31711906

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11956258	G-A	Hetero	INTERGENIC
SBS	Chr1	13702347	G-A	Hetero	INTRON
SBS	Chr1	23031462	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g219400
SBS	Chr1	27766299	C-T	Hetero	INTERGENIC
SBS	Chr2	8266568	C-T	Homo	INTERGENIC
SBS	Chr2	8266570	T-C	Homo	INTERGENIC
SBS	Chr2	10702271	T-C	Homo	INTERGENIC
SBS	Chr2	12780375	C-T	Hetero	INTERGENIC
SBS	Chr2	25191824	G-A	Homo	INTERGENIC
SBS	Chr2	29600936	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g298700
SBS	Chr3	19200523	T-G	Hetero	INTERGENIC
SBS	Chr3	19200524	T-A	Hetero	INTERGENIC
SBS	Chr3	20418737	C-T	Hetero	INTERGENIC
SBS	Chr3	27842534	C-T	Hetero	INTERGENIC
SBS	Chr3	31527695	T-A	Hetero	INTERGENIC
SBS	Chr4	3965294	G-A	Hetero	INTERGENIC
SBS	Chr4	4281878	G-A	Hetero	INTERGENIC
SBS	Chr4	5845589	C-G	Hetero	INTERGENIC
SBS	Chr4	10242308	C-T	Hetero	INTERGENIC
SBS	Chr4	20978902	A-G	Hetero	INTERGENIC
SBS	Chr4	22506270	T-A	Hetero	INTERGENIC
SBS	Chr4	34034161	A-G	Hetero	INTRON
SBS	Chr4	35867513	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g307300
SBS	Chr5	2399107	T-C	Homo	INTRON
SBS	Chr5	2679954	G-A	Hetero	INTERGENIC
SBS	Chr5	3065475	C-T	Homo	INTRON
SBS	Chr5	5360308	G-A	Homo	INTERGENIC
SBS	Chr6	7714165	C-T	Homo	INTERGENIC
SBS	Chr6	15311216	A-T	Hetero	INTERGENIC
SBS	Chr7	741913	T-C	Hetero	INTERGENIC
SBS	Chr7	9257928	G-A	Homo	INTERGENIC
SBS	Chr7	13965337	T-C	Homo	INTERGENIC
SBS	Chr7	22423584	A-G	Homo	INTERGENIC
SBS	Chr8	8376238	G-A	Homo	INTERGENIC
SBS	Chr8	9821529	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g091600
SBS	Chr8	19066034	A-G	Homo	UTR_5_PRIME
SBS	Chr8	24607859	C-T	Hetero	INTERGENIC
SBS	Chr9	1192148	A-G	Homo	INTRON
SBS	Chr9	6510174	C-T	Hetero	INTERGENIC
SBS	Chr9	7559011	T-A	Homo	INTERGENIC
SBS	Chr9	7573703	A-T	Hetero	INTERGENIC
SBS	Chr9	10579161	G-A	Homo	INTERGENIC
SBS	Chr9	11559604	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	18909869	T-A	Hetero	INTRON
SBS	Chr10	2810925	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g023100
SBS	Chr10	8968450	C-T	Hetero	INTERGENIC
SBS	Chr10	23538751	T-C	Hetero	INTERGENIC
SBS	Chr12	1703991	C-T	Hetero	INTRON
SBS	Chr12	5557652	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1681067	1681073	6
Deletion	Chr3	3508126	3508128	2
Deletion	Chr8	9266532	9266541	9
Deletion	Chr5	9530085	9530094	9
Deletion	Chr3	9944487	9944493	6
Deletion	Chr9	10501001	10542000	40999	4
Deletion	Chr4	10507868	10507870	2
Deletion	Chr3	12180001	12212000	31999	OsKitaake03g164900
Deletion	Chr2	17431686	17431687	1
Deletion	Chr5	17587811	17587812	1
Deletion	Chr3	19450001	19461000	10999
Deletion	Chr7	23630155	23630156	1
Deletion	Chr4	27127448	27127449	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10510395	10579718
Inversion	Chr9	10542346	10579724
Inversion	Chr4	11375454	11962333
Inversion	Chr3	19449504	19553249
Inversion	Chr3	19461307	19553260
Inversion	Chr3	31495610	31498155	OsKitaake03g331900
Inversion	Chr3	31572078	31711906

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes