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Mutant Information

Mutant Name	FN4230-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4230-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4223591 A-T Hetero INTRON
SBS Chr1 8387068 G-T Hetero INTERGENIC
SBS Chr1 10342464 A-G Hetero INTERGENIC
SBS Chr1 19453631 G-A Hetero INTERGENIC
SBS Chr1 19480605 A-G Homo INTERGENIC
SBS Chr1 25822360 C-T Hetero INTERGENIC
SBS Chr1 26532486 G-T Hetero INTERGENIC
SBS Chr1 33160131 C-G Hetero UTR_3_PRIME
SBS Chr2 882349 C-A Hetero UTR_5_PRIME
SBS Chr2 7938995 C-T Homo INTERGENIC
SBS Chr2 7938996 C-T Homo INTERGENIC
SBS Chr2 15722386 A-G Hetero UTR_3_PRIME
SBS Chr2 20822869 C-T Homo INTERGENIC
SBS Chr2 20822872 C-A Homo INTERGENIC
SBS Chr2 21162612 C-T Homo INTERGENIC
SBS Chr2 24290056 C-T Hetero INTERGENIC
SBS Chr2 25087892 G-A Homo INTERGENIC
SBS Chr2 29305810 C-T Homo INTERGENIC
SBS Chr2 31760602 C-T Hetero INTERGENIC
SBS Chr3 4918296 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 4918297 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g070900
SBS Chr3 7438979 A-G Hetero INTERGENIC
SBS Chr3 14486844 C-A Hetero INTERGENIC
SBS Chr3 29234455 G-A Hetero UTR_3_PRIME
SBS Chr4 1748411 G-T Hetero INTERGENIC
SBS Chr4 9904524 T-C Hetero INTERGENIC
SBS Chr4 15192762 G-T Hetero INTERGENIC
SBS Chr4 16974006 A-T Hetero INTERGENIC
SBS Chr5 3945982 C-G Hetero INTRON
SBS Chr5 8691457 G-A Hetero INTERGENIC
SBS Chr5 23989638 T-A Hetero INTERGENIC
SBS Chr5 23989643 C-G Hetero INTERGENIC
SBS Chr5 28965580 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g273400
SBS Chr6 21423158 G-A Homo INTERGENIC
SBS Chr7 7747423 C-T Hetero INTERGENIC
SBS Chr7 11152209 T-G Hetero UTR_3_PRIME
SBS Chr8 2403152 A-T Homo INTERGENIC
SBS Chr8 7230271 A-T Homo INTERGENIC
SBS Chr8 7440397 C-T Hetero INTERGENIC
SBS Chr8 12198491 G-A Hetero INTRON
SBS Chr9 12141361 G-A Hetero INTERGENIC
SBS Chr9 14734583 C-T Hetero INTERGENIC
SBS Chr9 15472030 T-A Hetero INTERGENIC
SBS Chr10 4967501 C-G Hetero INTERGENIC
SBS Chr10 10298628 A-G Homo INTERGENIC
SBS Chr10 11324361 G-T Hetero INTERGENIC
SBS Chr10 23827572 G-A Hetero INTERGENIC
SBS Chr11 10666805 G-A Hetero INTERGENIC
SBS Chr11 13660700 C-G Hetero INTERGENIC
SBS Chr11 22414813 C-T Hetero INTRON
SBS Chr12 4397561 A-G Hetero INTERGENIC
SBS Chr12 14826383 G-A Hetero INTERGENIC
SBS Chr12 23521811 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 113420 113440 20
Deletion Chr8 2368399 2368402 3
Deletion Chr11 2409963 2409969 6
Deletion Chr5 2759104 2759109 5
Deletion Chr11 5659834 5659838 4
Deletion Chr12 6061876 6061878 2
Deletion Chr11 8196001 8196011 10
Deletion Chr9 9010001 9026000 15999 3
Deletion Chr7 10995001 11142000 146999 5
Deletion Chr9 15554838 15554935 97
Deletion Chr10 15625750 15625759 9 OsKitaake10g101500
Deletion Chr1 17319361 17319369 8
Deletion Chr4 20919977 20919979 2
Deletion Chr2 23163845 23163849 4
Deletion Chr7 23400324 23400350 26
Deletion Chr7 27943716 27943724 8
Deletion Chr2 36152387 36152388 1 OsKitaake02g381900

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26775776 26775779 2
Insertion Chr5 22120503 22120506 2
Insertion Chr5 28610936 28610940 3
Insertion Chr7 6373254 6373257 2
Insertion Chr9 3020915 3020917 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 12078818 12492327
Inversion Chr8 12150207 12492324

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8667986 Chr1 17284457
Translocation Chr8 12121938 Chr2 8905451
Translocation Chr8 12150217 Chr2 8904171

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4223591	A-T	Hetero	INTRON
SBS	Chr1	8387068	G-T	Hetero	INTERGENIC
SBS	Chr1	10342464	A-G	Hetero	INTERGENIC
SBS	Chr1	19453631	G-A	Hetero	INTERGENIC
SBS	Chr1	19480605	A-G	Homo	INTERGENIC
SBS	Chr1	25822360	C-T	Hetero	INTERGENIC
SBS	Chr1	26532486	G-T	Hetero	INTERGENIC
SBS	Chr1	33160131	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	882349	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	7938995	C-T	Homo	INTERGENIC
SBS	Chr2	7938996	C-T	Homo	INTERGENIC
SBS	Chr2	15722386	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	20822869	C-T	Homo	INTERGENIC
SBS	Chr2	20822872	C-A	Homo	INTERGENIC
SBS	Chr2	21162612	C-T	Homo	INTERGENIC
SBS	Chr2	24290056	C-T	Hetero	INTERGENIC
SBS	Chr2	25087892	G-A	Homo	INTERGENIC
SBS	Chr2	29305810	C-T	Homo	INTERGENIC
SBS	Chr2	31760602	C-T	Hetero	INTERGENIC
SBS	Chr3	4918296	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	4918297	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g070900
SBS	Chr3	7438979	A-G	Hetero	INTERGENIC
SBS	Chr3	14486844	C-A	Hetero	INTERGENIC
SBS	Chr3	29234455	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	1748411	G-T	Hetero	INTERGENIC
SBS	Chr4	9904524	T-C	Hetero	INTERGENIC
SBS	Chr4	15192762	G-T	Hetero	INTERGENIC
SBS	Chr4	16974006	A-T	Hetero	INTERGENIC
SBS	Chr5	3945982	C-G	Hetero	INTRON
SBS	Chr5	8691457	G-A	Hetero	INTERGENIC
SBS	Chr5	23989638	T-A	Hetero	INTERGENIC
SBS	Chr5	23989643	C-G	Hetero	INTERGENIC
SBS	Chr5	28965580	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g273400
SBS	Chr6	21423158	G-A	Homo	INTERGENIC
SBS	Chr7	7747423	C-T	Hetero	INTERGENIC
SBS	Chr7	11152209	T-G	Hetero	UTR_3_PRIME
SBS	Chr8	2403152	A-T	Homo	INTERGENIC
SBS	Chr8	7230271	A-T	Homo	INTERGENIC
SBS	Chr8	7440397	C-T	Hetero	INTERGENIC
SBS	Chr8	12198491	G-A	Hetero	INTRON
SBS	Chr9	12141361	G-A	Hetero	INTERGENIC
SBS	Chr9	14734583	C-T	Hetero	INTERGENIC
SBS	Chr9	15472030	T-A	Hetero	INTERGENIC
SBS	Chr10	4967501	C-G	Hetero	INTERGENIC
SBS	Chr10	10298628	A-G	Homo	INTERGENIC
SBS	Chr10	11324361	G-T	Hetero	INTERGENIC
SBS	Chr10	23827572	G-A	Hetero	INTERGENIC
SBS	Chr11	10666805	G-A	Hetero	INTERGENIC
SBS	Chr11	13660700	C-G	Hetero	INTERGENIC
SBS	Chr11	22414813	C-T	Hetero	INTRON
SBS	Chr12	4397561	A-G	Hetero	INTERGENIC
SBS	Chr12	14826383	G-A	Hetero	INTERGENIC
SBS	Chr12	23521811	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	113420	113440	20
Deletion	Chr8	2368399	2368402	3
Deletion	Chr11	2409963	2409969	6
Deletion	Chr5	2759104	2759109	5
Deletion	Chr11	5659834	5659838	4
Deletion	Chr12	6061876	6061878	2
Deletion	Chr11	8196001	8196011	10
Deletion	Chr9	9010001	9026000	15999	3
Deletion	Chr7	10995001	11142000	146999	5
Deletion	Chr9	15554838	15554935	97
Deletion	Chr10	15625750	15625759	9	OsKitaake10g101500
Deletion	Chr1	17319361	17319369	8
Deletion	Chr4	20919977	20919979	2
Deletion	Chr2	23163845	23163849	4
Deletion	Chr7	23400324	23400350	26
Deletion	Chr7	27943716	27943724	8
Deletion	Chr2	36152387	36152388	1	OsKitaake02g381900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	12078818	12492327
Inversion	Chr8	12150207	12492324

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes