Search Kitaake

Mutant Information

Mutant Name	FN4231-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4231-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8538684 G-A Homo INTERGENIC
SBS Chr1 14109538 C-G Hetero INTERGENIC
SBS Chr1 16286150 A-C Homo INTERGENIC
SBS Chr2 4389533 C-G Hetero UTR_5_PRIME
SBS Chr2 14521956 T-C Hetero INTERGENIC
SBS Chr2 14689580 G-A Hetero INTERGENIC
SBS Chr3 10289376 G-A Homo INTERGENIC
SBS Chr3 19192557 T-C Hetero INTERGENIC
SBS Chr3 37139963 T-A Homo INTERGENIC
SBS Chr4 990811 G-A Hetero UTR_3_PRIME
SBS Chr4 4140080 G-A Hetero INTERGENIC
SBS Chr4 13256238 A-G Hetero INTERGENIC
SBS Chr4 22488509 C-T Hetero UTR_5_PRIME
SBS Chr4 31291752 C-A Hetero INTERGENIC
SBS Chr5 9088978 G-A Hetero INTERGENIC
SBS Chr5 14682097 G-A Hetero INTERGENIC
SBS Chr5 17084881 T-A Hetero STOP_GAINED OsKitaake05g131400
SBS Chr6 8785416 C-T Hetero INTERGENIC
SBS Chr6 21310921 C-T Hetero INTRON
SBS Chr6 22071179 T-G Hetero INTERGENIC
SBS Chr6 25204667 G-A Hetero INTERGENIC
SBS Chr7 5144255 A-T Hetero INTERGENIC
SBS Chr7 7303397 T-C Hetero INTERGENIC
SBS Chr8 20552540 T-C Homo INTERGENIC
SBS Chr8 20605336 A-C Homo INTERGENIC
SBS Chr8 22753703 C-T Homo INTRON
SBS Chr9 5304584 C-T Homo INTERGENIC
SBS Chr9 6016388 G-A Hetero INTERGENIC
SBS Chr11 14666483 A-C Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 11784454 11784481 27
Deletion Chr4 12596192 12596199 7
Deletion Chr11 15837196 15837200 4
Deletion Chr12 18870650 18870662 12
Deletion Chr6 20286001 20326000 39999 6
Deletion Chr11 29287319 29287327 8
Deletion Chr2 34898515 34898516 1
Deletion Chr4 36319155 36319158 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11883906 11883908 1
Insertion Chr3 15614300 15614303 2
Insertion Chr11 20527955 20527968 12
Insertion Chr11 26165991 26165996 4

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2079235 2622279 OsKitaake05g029900
Inversion Chr2 14684810 14693687
Inversion Chr2 14684815 14693701
Inversion Chr12 19556126 19568324 OsKitaake12g146400
Inversion Chr12 19556132 19568333 OsKitaake12g146400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2079231 Chr1 15671040
Translocation Chr5 2622278 Chr1 15672246 OsKitaake05g029900
Translocation Chr7 26369732 Chr5 18517037 2
Translocation Chr7 26369996 Chr5 18517055 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8538684	G-A	Homo	INTERGENIC
SBS	Chr1	14109538	C-G	Hetero	INTERGENIC
SBS	Chr1	16286150	A-C	Homo	INTERGENIC
SBS	Chr2	4389533	C-G	Hetero	UTR_5_PRIME
SBS	Chr2	14521956	T-C	Hetero	INTERGENIC
SBS	Chr2	14689580	G-A	Hetero	INTERGENIC
SBS	Chr3	10289376	G-A	Homo	INTERGENIC
SBS	Chr3	19192557	T-C	Hetero	INTERGENIC
SBS	Chr3	37139963	T-A	Homo	INTERGENIC
SBS	Chr4	990811	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	4140080	G-A	Hetero	INTERGENIC
SBS	Chr4	13256238	A-G	Hetero	INTERGENIC
SBS	Chr4	22488509	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	31291752	C-A	Hetero	INTERGENIC
SBS	Chr5	9088978	G-A	Hetero	INTERGENIC
SBS	Chr5	14682097	G-A	Hetero	INTERGENIC
SBS	Chr5	17084881	T-A	Hetero	STOP_GAINED	OsKitaake05g131400
SBS	Chr6	8785416	C-T	Hetero	INTERGENIC
SBS	Chr6	21310921	C-T	Hetero	INTRON
SBS	Chr6	22071179	T-G	Hetero	INTERGENIC
SBS	Chr6	25204667	G-A	Hetero	INTERGENIC
SBS	Chr7	5144255	A-T	Hetero	INTERGENIC
SBS	Chr7	7303397	T-C	Hetero	INTERGENIC
SBS	Chr8	20552540	T-C	Homo	INTERGENIC
SBS	Chr8	20605336	A-C	Homo	INTERGENIC
SBS	Chr8	22753703	C-T	Homo	INTRON
SBS	Chr9	5304584	C-T	Homo	INTERGENIC
SBS	Chr9	6016388	G-A	Hetero	INTERGENIC
SBS	Chr11	14666483	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	11784454	11784481	27
Deletion	Chr4	12596192	12596199	7
Deletion	Chr11	15837196	15837200	4
Deletion	Chr12	18870650	18870662	12
Deletion	Chr6	20286001	20326000	39999	6
Deletion	Chr11	29287319	29287327	8
Deletion	Chr2	34898515	34898516	1
Deletion	Chr4	36319155	36319158	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2079235	2622279	OsKitaake05g029900
Inversion	Chr2	14684810	14693687
Inversion	Chr2	14684815	14693701
Inversion	Chr12	19556126	19568324	OsKitaake12g146400
Inversion	Chr12	19556132	19568333	OsKitaake12g146400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes