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Mutant Information

Mutant Name	FN4234-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4234-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 66

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7471646 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g093500
SBS Chr1 9379575 C-T Hetero INTRON
SBS Chr1 15542378 G-A Hetero INTERGENIC
SBS Chr1 23306209 G-C Hetero INTERGENIC
SBS Chr1 25226393 T-A Hetero INTERGENIC
SBS Chr1 25380844 C-T Hetero INTERGENIC
SBS Chr1 28585339 C-T Homo INTRON
SBS Chr1 33472150 T-A Homo INTRON
SBS Chr1 33598052 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g344400
SBS Chr2 1912607 A-G Hetero INTERGENIC
SBS Chr2 9491860 G-A Hetero INTERGENIC
SBS Chr2 10615423 G-A Hetero INTERGENIC
SBS Chr2 15179921 C-T Hetero INTERGENIC
SBS Chr2 17455595 C-T Hetero INTERGENIC
SBS Chr2 25653363 G-A Hetero INTERGENIC
SBS Chr2 31696347 A-G Hetero UTR_3_PRIME
SBS Chr2 34412410 G-C Hetero INTERGENIC
SBS Chr2 37161600 G-C Hetero INTERGENIC
SBS Chr3 3873971 A-G Hetero INTERGENIC
SBS Chr3 9656839 T-C Hetero INTERGENIC
SBS Chr3 15377826 C-T Homo INTERGENIC
SBS Chr3 18888223 C-T Hetero INTERGENIC
SBS Chr3 33058928 A-C Homo INTERGENIC
SBS Chr3 33274213 G-T Hetero INTERGENIC
SBS Chr4 11501635 A-G Hetero INTERGENIC
SBS Chr4 12179062 T-A Hetero INTERGENIC
SBS Chr4 13389632 A-C Hetero INTERGENIC
SBS Chr4 20729479 T-C Hetero INTERGENIC
SBS Chr4 20861274 G-A Hetero INTERGENIC
SBS Chr4 35821530 G-A Hetero UTR_3_PRIME
SBS Chr5 8771066 C-T Hetero INTERGENIC
SBS Chr5 21495393 C-G Hetero INTERGENIC
SBS Chr5 29708671 G-A Hetero INTERGENIC
SBS Chr6 5029120 G-T Hetero INTERGENIC
SBS Chr6 14544384 G-A Hetero INTERGENIC
SBS Chr6 14544385 G-A Hetero INTERGENIC
SBS Chr6 14939922 C-G Hetero INTERGENIC
SBS Chr6 16490372 G-A Hetero INTERGENIC
SBS Chr6 17055110 G-A Hetero INTERGENIC
SBS Chr6 18842234 A-T Hetero INTERGENIC
SBS Chr6 18842235 C-T Hetero INTERGENIC
SBS Chr7 382012 C-G Hetero INTERGENIC
SBS Chr7 18878967 C-T Homo INTERGENIC
SBS Chr7 25272946 A-T Homo INTERGENIC
SBS Chr8 4369385 G-C Hetero INTERGENIC
SBS Chr8 13130435 G-A Hetero INTERGENIC
SBS Chr8 17573900 T-C Hetero INTERGENIC
SBS Chr8 23118345 A-T Hetero INTERGENIC
SBS Chr8 23731611 G-A Hetero INTERGENIC
SBS Chr8 24421807 T-C Hetero INTERGENIC
SBS Chr9 1668750 C-T Homo INTERGENIC
SBS Chr9 3327022 G-A Hetero INTERGENIC
SBS Chr9 14483768 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g098300
SBS Chr10 3003141 A-G Homo INTERGENIC
SBS Chr10 5706917 G-A Hetero INTERGENIC
SBS Chr11 5447693 G-A Homo INTERGENIC
SBS Chr11 11283238 G-A Hetero INTERGENIC
SBS Chr11 16277355 G-A Hetero INTERGENIC
SBS Chr11 18309229 A-G Hetero INTERGENIC
SBS Chr11 19900735 A-C Homo INTERGENIC
SBS Chr11 26675771 A-G Homo INTERGENIC
SBS Chr11 27386224 G-A Homo INTERGENIC
SBS Chr12 7702805 C-T Hetero INTERGENIC
SBS Chr12 12164960 T-A Hetero INTERGENIC
SBS Chr12 14308636 G-A Hetero INTRON
SBS Chr12 25987968 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 917349 917351 2
Deletion Chr1 1853344 1853362 18
Deletion Chr5 1925598 1925600 2 OsKitaake05g021600
Deletion Chr7 3511588 3511605 17
Deletion Chr2 9200957 9200987 30
Deletion Chr7 20037001 20170000 132999 16
Deletion Chr10 20294611 20294624 13
Deletion Chr12 21547657 21547674 17
Deletion Chr11 22324088 22324094 6
Deletion Chr11 23467981 23467987 6 OsKitaake11g187200
Deletion Chr11 23782342 23782343 1
Deletion Chr3 24196471 24196477 6
Deletion Chr3 25729132 25729136 4
Deletion Chr1 26944776 26944778 2 OsKitaake01g261800
Deletion Chr1 27223863 27223865 2
Deletion Chr11 27499739 27499741 2
Deletion Chr1 43205001 43490000 284999 49

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27890623 27890627 3
Insertion Chr5 5778692 5778694 1
Insertion Chr5 29295284 29295287 2
Insertion Chr9 18967599 18967602 2
Insertion Chr8 12243254 12243256 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 20033070 Chr1 22636759
Translocation Chr7 20162069 Chr1 22636719

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7471646	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g093500
SBS	Chr1	9379575	C-T	Hetero	INTRON
SBS	Chr1	15542378	G-A	Hetero	INTERGENIC
SBS	Chr1	23306209	G-C	Hetero	INTERGENIC
SBS	Chr1	25226393	T-A	Hetero	INTERGENIC
SBS	Chr1	25380844	C-T	Hetero	INTERGENIC
SBS	Chr1	28585339	C-T	Homo	INTRON
SBS	Chr1	33472150	T-A	Homo	INTRON
SBS	Chr1	33598052	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g344400
SBS	Chr2	1912607	A-G	Hetero	INTERGENIC
SBS	Chr2	9491860	G-A	Hetero	INTERGENIC
SBS	Chr2	10615423	G-A	Hetero	INTERGENIC
SBS	Chr2	15179921	C-T	Hetero	INTERGENIC
SBS	Chr2	17455595	C-T	Hetero	INTERGENIC
SBS	Chr2	25653363	G-A	Hetero	INTERGENIC
SBS	Chr2	31696347	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	34412410	G-C	Hetero	INTERGENIC
SBS	Chr2	37161600	G-C	Hetero	INTERGENIC
SBS	Chr3	3873971	A-G	Hetero	INTERGENIC
SBS	Chr3	9656839	T-C	Hetero	INTERGENIC
SBS	Chr3	15377826	C-T	Homo	INTERGENIC
SBS	Chr3	18888223	C-T	Hetero	INTERGENIC
SBS	Chr3	33058928	A-C	Homo	INTERGENIC
SBS	Chr3	33274213	G-T	Hetero	INTERGENIC
SBS	Chr4	11501635	A-G	Hetero	INTERGENIC
SBS	Chr4	12179062	T-A	Hetero	INTERGENIC
SBS	Chr4	13389632	A-C	Hetero	INTERGENIC
SBS	Chr4	20729479	T-C	Hetero	INTERGENIC
SBS	Chr4	20861274	G-A	Hetero	INTERGENIC
SBS	Chr4	35821530	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	8771066	C-T	Hetero	INTERGENIC
SBS	Chr5	21495393	C-G	Hetero	INTERGENIC
SBS	Chr5	29708671	G-A	Hetero	INTERGENIC
SBS	Chr6	5029120	G-T	Hetero	INTERGENIC
SBS	Chr6	14544384	G-A	Hetero	INTERGENIC
SBS	Chr6	14544385	G-A	Hetero	INTERGENIC
SBS	Chr6	14939922	C-G	Hetero	INTERGENIC
SBS	Chr6	16490372	G-A	Hetero	INTERGENIC
SBS	Chr6	17055110	G-A	Hetero	INTERGENIC
SBS	Chr6	18842234	A-T	Hetero	INTERGENIC
SBS	Chr6	18842235	C-T	Hetero	INTERGENIC
SBS	Chr7	382012	C-G	Hetero	INTERGENIC
SBS	Chr7	18878967	C-T	Homo	INTERGENIC
SBS	Chr7	25272946	A-T	Homo	INTERGENIC
SBS	Chr8	4369385	G-C	Hetero	INTERGENIC
SBS	Chr8	13130435	G-A	Hetero	INTERGENIC
SBS	Chr8	17573900	T-C	Hetero	INTERGENIC
SBS	Chr8	23118345	A-T	Hetero	INTERGENIC
SBS	Chr8	23731611	G-A	Hetero	INTERGENIC
SBS	Chr8	24421807	T-C	Hetero	INTERGENIC
SBS	Chr9	1668750	C-T	Homo	INTERGENIC
SBS	Chr9	3327022	G-A	Hetero	INTERGENIC
SBS	Chr9	14483768	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g098300
SBS	Chr10	3003141	A-G	Homo	INTERGENIC
SBS	Chr10	5706917	G-A	Hetero	INTERGENIC
SBS	Chr11	5447693	G-A	Homo	INTERGENIC
SBS	Chr11	11283238	G-A	Hetero	INTERGENIC
SBS	Chr11	16277355	G-A	Hetero	INTERGENIC
SBS	Chr11	18309229	A-G	Hetero	INTERGENIC
SBS	Chr11	19900735	A-C	Homo	INTERGENIC
SBS	Chr11	26675771	A-G	Homo	INTERGENIC
SBS	Chr11	27386224	G-A	Homo	INTERGENIC
SBS	Chr12	7702805	C-T	Hetero	INTERGENIC
SBS	Chr12	12164960	T-A	Hetero	INTERGENIC
SBS	Chr12	14308636	G-A	Hetero	INTRON
SBS	Chr12	25987968	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	917349	917351	2
Deletion	Chr1	1853344	1853362	18
Deletion	Chr5	1925598	1925600	2	OsKitaake05g021600
Deletion	Chr7	3511588	3511605	17
Deletion	Chr2	9200957	9200987	30
Deletion	Chr7	20037001	20170000	132999	16
Deletion	Chr10	20294611	20294624	13
Deletion	Chr12	21547657	21547674	17
Deletion	Chr11	22324088	22324094	6
Deletion	Chr11	23467981	23467987	6	OsKitaake11g187200
Deletion	Chr11	23782342	23782343	1
Deletion	Chr3	24196471	24196477	6
Deletion	Chr3	25729132	25729136	4
Deletion	Chr1	26944776	26944778	2	OsKitaake01g261800
Deletion	Chr1	27223863	27223865	2
Deletion	Chr11	27499739	27499741	2
Deletion	Chr1	43205001	43490000	284999	49

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	20033070	Chr1	22636759
Translocation	Chr7	20162069	Chr1	22636719

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes