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| Mutant Information |
|---|
| Mutant Name | FN4235-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4235-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16578744 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 5051506 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 22945041 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23695083 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25230078 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8127242 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10188059 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 10869670 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11128173 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11128174 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 30101541 | A-T | Homo | #VALUE! | |
| SBS | Chr6 | 8959505 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 25674061 | A-T | Homo | INTRON | |
| SBS | Chr6 | 25909711 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 10969056 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 25269167 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25269168 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 25325734 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25325735 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7403651 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15771258 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28398783 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6248249 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9387462 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22458926 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4183409 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 1045788 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7208243 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25286022 | C-A | Homo | SYNONYMOUS_CODING |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1832598 | 1832614 | 16 | |
| Deletion | Chr5 | 4407366 | 4407367 | 1 | |
| Deletion | Chr6 | 5972001 | 6012000 | 39999 | 4 |
| Deletion | Chr12 | 7590001 | 7623000 | 32999 | 8 |
| Deletion | Chr12 | 8529001 | 8610000 | 80999 | |
| Deletion | Chr11 | 8735409 | 8735423 | 14 | OsKitaake11g094400 |
| Deletion | Chr4 | 10003001 | 10021000 | 17999 | OsKitaake04g053700 |
| Deletion | Chr1 | 17090470 | 17090471 | 1 | |
| Deletion | Chr1 | 20470073 | 20470074 | 1 | |
| Deletion | Chr12 | 22705377 | 22705379 | 2 | |
| Deletion | Chr10 | 23928382 | 23928400 | 18 | |
| Deletion | Chr1 | 25788631 | 25788638 | 7 | |
| Deletion | Chr12 | 26228232 | 26228237 | 5 | |
| Deletion | Chr8 | 28319222 | 28319226 | 4 | |
| Deletion | Chr3 | 28388139 | 28388142 | 3 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 7522448 | 7527161 | OsKitaake12g082200 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 7044051 | Chr7 | 25967464 | OsKitaake07g237400 |
| Translocation | Chr12 | 7389590 | Chr6 | 6773920 | |
| Translocation | Chr12 | 7389844 | Chr6 | 6773788 | |
| Translocation | Chr12 | 7670741 | Chr7 | 25966129 | OsKitaake07g237400 |
| Translocation | Chr4 | 10003568 | Chr1 | 14588989 | OsKitaake01g165700 |
| Translocation | Chr4 | 10025259 | Chr1 | 14585921 |