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Mutant Information

Mutant Name	FN424-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN424-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15226716 C-A Hetero INTERGENIC
SBS Chr1 24618189 T-C Homo INTERGENIC
SBS Chr1 32523174 G-T Hetero INTERGENIC
SBS Chr1 40113191 C-A Hetero INTERGENIC
SBS Chr1 40453590 A-C Hetero UTR_3_PRIME
SBS Chr2 3745061 A-T Hetero INTERGENIC
SBS Chr2 16439220 T-C Homo INTERGENIC
SBS Chr2 26386783 A-T Homo INTRON
SBS Chr2 26386784 G-A Homo INTRON
SBS Chr2 26386791 G-A Homo INTRON
SBS Chr3 15428740 T-G Hetero INTRON
SBS Chr3 23402002 C-G Homo UTR_3_PRIME
SBS Chr3 30889043 T-C Hetero INTRON
SBS Chr3 33214472 A-G Hetero UTR_5_PRIME
SBS Chr3 33372423 C-T Hetero INTERGENIC
SBS Chr3 34535476 T-A Hetero INTERGENIC
SBS Chr3 35470137 C-A Homo INTERGENIC
SBS Chr3 35861651 C-G Hetero INTERGENIC
SBS Chr4 2605347 T-G Hetero INTERGENIC
SBS Chr4 5293019 C-T Hetero INTERGENIC
SBS Chr4 6866232 C-T Hetero INTERGENIC
SBS Chr4 9976832 A-T Hetero INTERGENIC
SBS Chr4 27338897 G-T Hetero INTERGENIC
SBS Chr4 27338898 C-T Hetero INTERGENIC
SBS Chr4 30230434 A-T Homo INTERGENIC
SBS Chr4 31337644 G-A Hetero INTERGENIC
SBS Chr5 4657915 G-A Hetero INTERGENIC
SBS Chr6 10007498 C-T Hetero INTERGENIC
SBS Chr6 10007499 G-A Hetero INTERGENIC
SBS Chr6 10108312 G-A Hetero UTR_5_PRIME
SBS Chr6 25688859 G-T Homo INTERGENIC
SBS Chr7 13107704 G-C Hetero INTERGENIC
SBS Chr7 14321288 C-T Hetero UTR_3_PRIME
SBS Chr7 21978612 A-G Hetero UTR_3_PRIME
SBS Chr7 26976325 T-C Hetero INTRON
SBS Chr8 1918975 A-G Hetero INTERGENIC
SBS Chr8 2388767 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 3152033 C-T Hetero INTERGENIC
SBS Chr9 4591260 C-T Homo INTERGENIC
SBS Chr9 9747606 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g059200
SBS Chr10 3854188 T-G Homo INTERGENIC
SBS Chr10 12379186 G-A Hetero INTERGENIC
SBS Chr11 9768464 G-A Homo INTERGENIC
SBS Chr11 9768465 C-G Homo INTERGENIC
SBS Chr12 5608060 C-T Hetero INTERGENIC
SBS Chr12 18838216 G-A Hetero INTERGENIC
SBS Chr12 24917270 G-C Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1608515 1608517 2
Deletion Chr10 3875399 3875403 4
Deletion Chr3 3952231 3952238 7
Deletion Chr8 5053001 5547000 493999 51
Deletion Chr7 7428408 7428420 12
Deletion Chr6 7489307 7489308 1
Deletion Chr5 8933776 8933780 4
Deletion Chr8 10689006 10689012 6
Deletion Chr7 11712054 11712055 1
Deletion Chr8 12883205 12883219 14
Deletion Chr11 14084399 14084404 5
Deletion Chr8 15131193 15131197 4
Deletion Chr8 17151323 17151327 4
Deletion Chr12 24221191 24221192 1
Deletion Chr11 24769842 24769844 2
Deletion Chr12 25386161 25386163 2
Deletion Chr3 28446936 28446937 1 OsKitaake03g294600
Deletion Chr1 41606577 41606579 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4037151 4037154 2
Insertion Chr9 17379605 17379612 6
Insertion Chr11 2629069 2629072 2
Insertion Chr11 19826173 19826176 2
Insertion Chr7 12248929 12248931 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 27859782 28131118
Inversion Chr3 33409622 33666084 2
Inversion Chr3 33409632 33666088 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10990427 Chr7 23855723 OsKitaake07g210150
Translocation Chr12 10991525 Chr7 23855726 OsKitaake07g210150
Translocation Chr3 12345581 Chr1 32634975 2
Translocation Chr3 12345594 Chr1 32633929 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15226716	C-A	Hetero	INTERGENIC
SBS	Chr1	24618189	T-C	Homo	INTERGENIC
SBS	Chr1	32523174	G-T	Hetero	INTERGENIC
SBS	Chr1	40113191	C-A	Hetero	INTERGENIC
SBS	Chr1	40453590	A-C	Hetero	UTR_3_PRIME
SBS	Chr2	3745061	A-T	Hetero	INTERGENIC
SBS	Chr2	16439220	T-C	Homo	INTERGENIC
SBS	Chr2	26386783	A-T	Homo	INTRON
SBS	Chr2	26386784	G-A	Homo	INTRON
SBS	Chr2	26386791	G-A	Homo	INTRON
SBS	Chr3	15428740	T-G	Hetero	INTRON
SBS	Chr3	23402002	C-G	Homo	UTR_3_PRIME
SBS	Chr3	30889043	T-C	Hetero	INTRON
SBS	Chr3	33214472	A-G	Hetero	UTR_5_PRIME
SBS	Chr3	33372423	C-T	Hetero	INTERGENIC
SBS	Chr3	34535476	T-A	Hetero	INTERGENIC
SBS	Chr3	35470137	C-A	Homo	INTERGENIC
SBS	Chr3	35861651	C-G	Hetero	INTERGENIC
SBS	Chr4	2605347	T-G	Hetero	INTERGENIC
SBS	Chr4	5293019	C-T	Hetero	INTERGENIC
SBS	Chr4	6866232	C-T	Hetero	INTERGENIC
SBS	Chr4	9976832	A-T	Hetero	INTERGENIC
SBS	Chr4	27338897	G-T	Hetero	INTERGENIC
SBS	Chr4	27338898	C-T	Hetero	INTERGENIC
SBS	Chr4	30230434	A-T	Homo	INTERGENIC
SBS	Chr4	31337644	G-A	Hetero	INTERGENIC
SBS	Chr5	4657915	G-A	Hetero	INTERGENIC
SBS	Chr6	10007498	C-T	Hetero	INTERGENIC
SBS	Chr6	10007499	G-A	Hetero	INTERGENIC
SBS	Chr6	10108312	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	25688859	G-T	Homo	INTERGENIC
SBS	Chr7	13107704	G-C	Hetero	INTERGENIC
SBS	Chr7	14321288	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	21978612	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	26976325	T-C	Hetero	INTRON
SBS	Chr8	1918975	A-G	Hetero	INTERGENIC
SBS	Chr8	2388767	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	3152033	C-T	Hetero	INTERGENIC
SBS	Chr9	4591260	C-T	Homo	INTERGENIC
SBS	Chr9	9747606	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g059200
SBS	Chr10	3854188	T-G	Homo	INTERGENIC
SBS	Chr10	12379186	G-A	Hetero	INTERGENIC
SBS	Chr11	9768464	G-A	Homo	INTERGENIC
SBS	Chr11	9768465	C-G	Homo	INTERGENIC
SBS	Chr12	5608060	C-T	Hetero	INTERGENIC
SBS	Chr12	18838216	G-A	Hetero	INTERGENIC
SBS	Chr12	24917270	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1608515	1608517	2
Deletion	Chr10	3875399	3875403	4
Deletion	Chr3	3952231	3952238	7
Deletion	Chr8	5053001	5547000	493999	51
Deletion	Chr7	7428408	7428420	12
Deletion	Chr6	7489307	7489308	1
Deletion	Chr5	8933776	8933780	4
Deletion	Chr8	10689006	10689012	6
Deletion	Chr7	11712054	11712055	1
Deletion	Chr8	12883205	12883219	14
Deletion	Chr11	14084399	14084404	5
Deletion	Chr8	15131193	15131197	4
Deletion	Chr8	17151323	17151327	4
Deletion	Chr12	24221191	24221192	1
Deletion	Chr11	24769842	24769844	2
Deletion	Chr12	25386161	25386163	2
Deletion	Chr3	28446936	28446937	1	OsKitaake03g294600
Deletion	Chr1	41606577	41606579	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27859782	28131118
Inversion	Chr3	33409622	33666084	2
Inversion	Chr3	33409632	33666088	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes