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| Mutant Information |
|---|
| Mutant Name | FN4240-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4240-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16854895 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 21536619 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34524736 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 6813089 | C-T | Homo | INTRON | |
| SBS | Chr3 | 3456203 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15114450 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 18001021 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32147983 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3583391 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9590286 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 13810905 | T-A | Homo | INTRON | |
| SBS | Chr4 | 14917903 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 9185376 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 16445979 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 398361 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 20595387 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g184500 |
| SBS | Chr6 | 29246320 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 5337244 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 9303822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28144954 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 512702 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 13114246 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 21896628 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 968452 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4986597 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 10136856 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 10606907 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18104829 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24400192 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2267064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2400044 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 6644137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6644138 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8200199 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8490087 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14041487 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18271304 | A-G | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3346208 | 3346224 | 16 | OsKitaake06g046600 |
| Deletion | Chr5 | 4520971 | 4520974 | 3 | |
| Deletion | Chr5 | 4643373 | 4643395 | 22 | |
| Deletion | Chr9 | 6682889 | 6682892 | 3 | |
| Deletion | Chr12 | 18284111 | 18284112 | 1 | |
| Deletion | Chr12 | 23174321 | 23174322 | 1 | |
| Deletion | Chr1 | 27889355 | 27889373 | 18 | |
| Deletion | Chr7 | 28468001 | 28482000 | 13999 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 36103583 | 36103585 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 438863 | 493819 | OsKitaake12g005401 |
| Inversion | Chr12 | 438876 | 493835 | OsKitaake12g005401 |
| Inversion | Chr4 | 5517233 | 5572227 | |
| Inversion | Chr9 | 20739910 | 20774813 | 2 |
| Inversion | Chr9 | 20742551 | 20774818 | 2 |