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Mutant Information 

Mutant NameFN4241-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4241-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr23876390G-AHomoINTERGENIC
SBS  Chr25226199G-AHeteroINTRON
SBS  Chr27680054G-AHeteroUTR_5_PRIME
SBS  Chr222291981T-CHomoNON_SYNONYMOUS_CODINGOsKitaake02g215800
SBS  Chr37703339C-GHomoINTERGENIC
SBS  Chr319644807G-AHomoINTERGENIC
SBS  Chr410692778C-GHeteroINTERGENIC
SBS  Chr417228289T-GHeteroINTERGENIC
SBS  Chr51069158C-AHomoINTERGENIC
SBS  Chr78350222T-CHomoINTERGENIC
SBS  Chr79738222C-THeteroINTERGENIC
SBS  Chr712780689A-GHeteroINTERGENIC
SBS  Chr713308896G-AHeteroINTRON
SBS  Chr722162634A-GHomoINTERGENIC
SBS  Chr8992007G-AHeteroINTRON
SBS  Chr82593541T-CHeteroINTRON
SBS  Chr83304712T-CHeteroINTERGENIC
SBS  Chr811883179T-AHeteroINTERGENIC
SBS  Chr816298569T-CHeteroINTERGENIC
SBS  Chr915993821G-THomoINTERGENIC
SBS  Chr916303587G-AHomoINTERGENIC
SBS  Chr118761834G-AHeteroINTERGENIC
SBS  Chr1112460495G-AHeteroINTERGENIC
SBS  Chr1115378761G-AHeteroINTERGENIC
SBS  Chr1117647564T-CHeteroINTERGENIC
SBS  Chr1119802507C-THeteroINTERGENIC
SBS  Chr123550941G-THomoSPLICE_SITE_REGION
SBS  Chr1219848194G-CHeteroUTR_5_PRIME

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr8145376214537686
Deletion  Chr84008997400901215
Deletion  Chr4582073958207445
Deletion  Chr8815639581563972
Deletion  Chr4875867387586785
Deletion  Chr7112916731129168613
Deletion  Chr711538230115382322
Deletion  Chr11133710321337104513
Deletion  Chr9159410011628000033899941
Deletion  Chr9162870011630400016999
Deletion  Chr517314637173146403
Deletion  Chr818470600184706033OsKitaake08g137500
Deletion  Chr9214940012172900023499942
Deletion  Chr9217470012197900023199941
Deletion  Chr522921240229212466
Deletion  Chr723407313234073185
Deletion  Chr1223802151238021565

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr9231729323173028
Insertion  Chr1022635617226356202
Insertion  Chr1110270784102707861

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr725586553360071OsKitaake07g042500
Inversion  Chr91561838915993619OsKitaake09g110400
Inversion  Chr920350720205305032
Inversion  Chr920350733205305162

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr918756931Chr435834771OsKitaake04g307000
Translocation  Chr918756938Chr435833863OsKitaake04g307000