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Mutant Information |
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Mutant Name | FN4241-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4241-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr2 | 3876390 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 5226199 | G-A | Hetero | INTRON | |
SBS | Chr2 | 7680054 | G-A | Hetero | UTR_5_PRIME | |
SBS | Chr2 | 22291981 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g215800 |
SBS | Chr3 | 7703339 | C-G | Homo | INTERGENIC | |
SBS | Chr3 | 19644807 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 10692778 | C-G | Hetero | INTERGENIC | |
SBS | Chr4 | 17228289 | T-G | Hetero | INTERGENIC | |
SBS | Chr5 | 1069158 | C-A | Homo | INTERGENIC | |
SBS | Chr7 | 8350222 | T-C | Homo | INTERGENIC | |
SBS | Chr7 | 9738222 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 12780689 | A-G | Hetero | INTERGENIC | |
SBS | Chr7 | 13308896 | G-A | Hetero | INTRON | |
SBS | Chr7 | 22162634 | A-G | Homo | INTERGENIC | |
SBS | Chr8 | 992007 | G-A | Hetero | INTRON | |
SBS | Chr8 | 2593541 | T-C | Hetero | INTRON | |
SBS | Chr8 | 3304712 | T-C | Hetero | INTERGENIC | |
SBS | Chr8 | 11883179 | T-A | Hetero | INTERGENIC | |
SBS | Chr8 | 16298569 | T-C | Hetero | INTERGENIC | |
SBS | Chr9 | 15993821 | G-T | Homo | INTERGENIC | |
SBS | Chr9 | 16303587 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 8761834 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 12460495 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 15378761 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 17647564 | T-C | Hetero | INTERGENIC | |
SBS | Chr11 | 19802507 | C-T | Hetero | INTERGENIC | |
SBS | Chr12 | 3550941 | G-T | Homo | SPLICE_SITE_REGION | |
SBS | Chr12 | 19848194 | G-C | Hetero | UTR_5_PRIME |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr8 | 1453762 | 1453768 | 6 | |
Deletion | Chr8 | 4008997 | 4009012 | 15 | |
Deletion | Chr4 | 5820739 | 5820744 | 5 | |
Deletion | Chr8 | 8156395 | 8156397 | 2 | |
Deletion | Chr4 | 8758673 | 8758678 | 5 | |
Deletion | Chr7 | 11291673 | 11291686 | 13 | |
Deletion | Chr7 | 11538230 | 11538232 | 2 | |
Deletion | Chr11 | 13371032 | 13371045 | 13 | |
Deletion | Chr9 | 15941001 | 16280000 | 338999 | 41 |
Deletion | Chr9 | 16287001 | 16304000 | 16999 | |
Deletion | Chr5 | 17314637 | 17314640 | 3 | |
Deletion | Chr8 | 18470600 | 18470603 | 3 | OsKitaake08g137500 |
Deletion | Chr9 | 21494001 | 21729000 | 234999 | 42 |
Deletion | Chr9 | 21747001 | 21979000 | 231999 | 41 |
Deletion | Chr5 | 22921240 | 22921246 | 6 | |
Deletion | Chr7 | 23407313 | 23407318 | 5 | |
Deletion | Chr12 | 23802151 | 23802156 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr9 | 2317293 | 2317302 | 8 | |
Insertion | Chr10 | 22635617 | 22635620 | 2 | |
Insertion | Chr11 | 10270784 | 10270786 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr7 | 2558655 | 3360071 | OsKitaake07g042500 |
Inversion | Chr9 | 15618389 | 15993619 | OsKitaake09g110400 |
Inversion | Chr9 | 20350720 | 20530503 | 2 |
Inversion | Chr9 | 20350733 | 20530516 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr9 | 18756931 | Chr4 | 35834771 | OsKitaake04g307000 |
Translocation | Chr9 | 18756938 | Chr4 | 35833863 | OsKitaake04g307000 |