Search Kitaake
Mutant Information |
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Mutant Name | FN4247-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4247-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 45
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr2 | 2448594 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g035500 |
SBS | Chr2 | 11779185 | A-G | Hetero | INTERGENIC | |
SBS | Chr2 | 25564677 | T-C | Hetero | INTERGENIC | |
SBS | Chr3 | 7473358 | T-A | Hetero | INTERGENIC | |
SBS | Chr3 | 11179520 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 17490354 | A-T | Hetero | INTERGENIC | |
SBS | Chr3 | 35619802 | A-T | Homo | INTERGENIC | |
SBS | Chr4 | 2189712 | T-G | Hetero | INTERGENIC | |
SBS | Chr4 | 20970154 | G-T | Homo | INTERGENIC | |
SBS | Chr4 | 22446308 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 35951786 | T-A | Hetero | INTERGENIC | |
SBS | Chr5 | 17817825 | A-G | Hetero | INTERGENIC | |
SBS | Chr5 | 19213410 | G-A | Hetero | INTRON | |
SBS | Chr5 | 19630377 | A-T | Hetero | INTERGENIC | |
SBS | Chr5 | 24576059 | A-T | Hetero | INTRON | |
SBS | Chr5 | 30020184 | C-G | Hetero | INTERGENIC | |
SBS | Chr6 | 14861683 | T-C | Hetero | INTERGENIC | |
SBS | Chr7 | 1633616 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g022300 |
SBS | Chr7 | 10618039 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 15209623 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 21051570 | T-C | Hetero | INTRON | |
SBS | Chr7 | 22922855 | A-G | Hetero | SYNONYMOUS_CODING | |
SBS | Chr7 | 22927053 | A-G | Hetero | INTERGENIC | |
SBS | Chr7 | 23953414 | C-T | Hetero | INTRON | |
SBS | Chr7 | 25104880 | T-C | Hetero | INTERGENIC | |
SBS | Chr8 | 10921731 | C-A | Hetero | INTERGENIC | |
SBS | Chr9 | 3637615 | G-A | Hetero | INTRON | |
SBS | Chr9 | 9504295 | T-C | Homo | INTRON | |
SBS | Chr10 | 2886078 | G-A | Homo | INTERGENIC | |
SBS | Chr10 | 20553230 | T-C | Hetero | INTERGENIC | |
SBS | Chr10 | 22063971 | C-T | Hetero | INTERGENIC | |
SBS | Chr11 | 16192274 | A-T | Hetero | INTERGENIC | |
SBS | Chr11 | 16717849 | G-T | Hetero | INTERGENIC | |
SBS | Chr11 | 16768239 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 23818376 | G-T | Hetero | INTERGENIC | |
SBS | Chr11 | 24486061 | C-T | Hetero | INTRON | |
SBS | Chr11 | 24486063 | A-T | Hetero | INTRON | |
SBS | Chr11 | 28702516 | T-C | Hetero | INTERGENIC | |
SBS | Chr12 | 7418949 | G-T | Hetero | INTERGENIC | |
SBS | Chr12 | 9301739 | A-T | Hetero | INTERGENIC | |
SBS | Chr12 | 9301741 | G-C | Hetero | INTERGENIC | |
SBS | Chr12 | 14452349 | T-C | Hetero | INTERGENIC | |
SBS | Chr12 | 20988838 | T-C | Hetero | INTERGENIC | |
SBS | Chr12 | 21805770 | G-A | Hetero | INTRON | |
SBS | Chr12 | 26826734 | C-A | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr3 | 196564 | 196581 | 17 | |
Deletion | Chr6 | 425370 | 425375 | 5 | OsKitaake06g003100 |
Deletion | Chr7 | 2013730 | 2013731 | 1 | OsKitaake07g027400 |
Deletion | Chr3 | 11218634 | 11218646 | 12 | |
Deletion | Chr6 | 12328001 | 12380000 | 51999 | 3 |
Deletion | Chr6 | 13329001 | 13399000 | 69999 | 3 |
Deletion | Chr8 | 14043435 | 14043445 | 10 | |
Deletion | Chr8 | 14224902 | 14224904 | 2 | |
Deletion | Chr11 | 15840611 | 15840613 | 2 | |
Deletion | Chr7 | 17580802 | 17580806 | 4 | |
Deletion | Chr9 | 17634589 | 17634596 | 7 | |
Deletion | Chr9 | 18575033 | 18575036 | 3 | |
Deletion | Chr6 | 19724186 | 19724192 | 6 | |
Deletion | Chr8 | 22761008 | 22761013 | 5 | |
Deletion | Chr1 | 24684543 | 24684544 | 1 | |
Deletion | Chr11 | 27953455 | 27953465 | 10 | |
Deletion | Chr7 | 29598883 | 29598885 | 2 | |
Deletion | Chr3 | 35330458 | 35330463 | 5 |
Insertions: 6
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr6 | 12327567 | 12488423 | |
Inversion | Chr6 | 12380105 | 12488424 | |
Inversion | Chr5 | 19256409 | 19632201 | |
Inversion | Chr5 | 19271655 | 19632340 | OsKitaake05g151100 |
Inversion | Chr11 | 23425155 | 23812335 | OsKitaake11g190700 |
Inversion | Chr11 | 23425166 | 23812340 | OsKitaake11g190700 |
Translocations: 9
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr6 | 13398781 | Chr3 | 2221543 | |
Translocation | Chr12 | 18668001 | Chr9 | 5281902 | OsKitaake12g137600 |
Translocation | Chr12 | 18670758 | Chr9 | 5281882 | OsKitaake12g137700 |
Translocation | Chr12 | 18670780 | Chr7 | 2300090 | OsKitaake12g137700 |
Translocation | Chr12 | 18672906 | Chr7 | 2300082 | OsKitaake12g137700 |
Translocation | Chr6 | 18705136 | Chr1 | 26213370 | |
Translocation | Chr5 | 19256415 | Chr2 | 8872208 | |
Translocation | Chr5 | 19271644 | Chr2 | 8872204 | OsKitaake05g151100 |
Translocation | Chr6 | 19594491 | Chr1 | 26216057 |