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Mutant Information 

Mutant NameFN4247-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4247-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr22448594C-GHeteroNON_SYNONYMOUS_CODINGOsKitaake02g035500
SBS  Chr211779185A-GHeteroINTERGENIC
SBS  Chr225564677T-CHeteroINTERGENIC
SBS  Chr37473358T-AHeteroINTERGENIC
SBS  Chr311179520C-THeteroINTERGENIC
SBS  Chr317490354A-THeteroINTERGENIC
SBS  Chr335619802A-THomoINTERGENIC
SBS  Chr42189712T-GHeteroINTERGENIC
SBS  Chr420970154G-THomoINTERGENIC
SBS  Chr422446308C-THeteroINTERGENIC
SBS  Chr435951786T-AHeteroINTERGENIC
SBS  Chr517817825A-GHeteroINTERGENIC
SBS  Chr519213410G-AHeteroINTRON
SBS  Chr519630377A-THeteroINTERGENIC
SBS  Chr524576059A-THeteroINTRON
SBS  Chr530020184C-GHeteroINTERGENIC
SBS  Chr614861683T-CHeteroINTERGENIC
SBS  Chr71633616T-AHeteroNON_SYNONYMOUS_CODINGOsKitaake07g022300
SBS  Chr710618039G-AHeteroINTERGENIC
SBS  Chr715209623G-AHeteroINTERGENIC
SBS  Chr721051570T-CHeteroINTRON
SBS  Chr722922855A-GHeteroSYNONYMOUS_CODING
SBS  Chr722927053A-GHeteroINTERGENIC
SBS  Chr723953414C-THeteroINTRON
SBS  Chr725104880T-CHeteroINTERGENIC
SBS  Chr810921731C-AHeteroINTERGENIC
SBS  Chr93637615G-AHeteroINTRON
SBS  Chr99504295T-CHomoINTRON
SBS  Chr102886078G-AHomoINTERGENIC
SBS  Chr1020553230T-CHeteroINTERGENIC
SBS  Chr1022063971C-THeteroINTERGENIC
SBS  Chr1116192274A-THeteroINTERGENIC
SBS  Chr1116717849G-THeteroINTERGENIC
SBS  Chr1116768239G-AHomoINTERGENIC
SBS  Chr1123818376G-THeteroINTERGENIC
SBS  Chr1124486061C-THeteroINTRON
SBS  Chr1124486063A-THeteroINTRON
SBS  Chr1128702516T-CHeteroINTERGENIC
SBS  Chr127418949G-THeteroINTERGENIC
SBS  Chr129301739A-THeteroINTERGENIC
SBS  Chr129301741G-CHeteroINTERGENIC
SBS  Chr1214452349T-CHeteroINTERGENIC
SBS  Chr1220988838T-CHeteroINTERGENIC
SBS  Chr1221805770G-AHeteroINTRON
SBS  Chr1226826734C-AHeteroINTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr319656419658117
Deletion  Chr64253704253755OsKitaake06g003100
Deletion  Chr7201373020137311OsKitaake07g027400
Deletion  Chr3112186341121864612
Deletion  Chr61232800112380000519993
Deletion  Chr61332900113399000699993
Deletion  Chr8140434351404344510
Deletion  Chr814224902142249042
Deletion  Chr1115840611158406132
Deletion  Chr717580802175808064
Deletion  Chr917634589176345967
Deletion  Chr918575033185750363
Deletion  Chr619724186197241926
Deletion  Chr822761008227610135
Deletion  Chr124684543246845441
Deletion  Chr11279534552795346510
Deletion  Chr729598883295988852
Deletion  Chr335330458353304635

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr135739413357394162
Insertion  Chr137108282371082874
Insertion  Chr525299891252998942
Insertion  Chr630442268304422712
Insertion  Chr10133892113389231
Insertion  Chr4278982627898325

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr61232756712488423
Inversion  Chr61238010512488424
Inversion  Chr51925640919632201
Inversion  Chr51927165519632340OsKitaake05g151100
Inversion  Chr112342515523812335OsKitaake11g190700
Inversion  Chr112342516623812340OsKitaake11g190700

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr613398781Chr32221543
Translocation  Chr1218668001Chr95281902OsKitaake12g137600
Translocation  Chr1218670758Chr95281882OsKitaake12g137700
Translocation  Chr1218670780Chr72300090OsKitaake12g137700
Translocation  Chr1218672906Chr72300082OsKitaake12g137700
Translocation  Chr618705136Chr126213370
Translocation  Chr519256415Chr28872208
Translocation  Chr519271644Chr28872204OsKitaake05g151100
Translocation  Chr619594491Chr126216057