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| Mutant Information |
|---|
| Mutant Name | FN4249-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4249-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19197478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24377228 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 25683538 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25944320 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 31708851 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 42387647 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34195463 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7863647 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33211869 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 7959866 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 11478743 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12867822 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29268184 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 2055441 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8667244 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24396623 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11473713 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18501460 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22289958 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23624270 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20812520 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 21051231 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26527312 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 7560527 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8252260 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g046632 |
| SBS | Chr10 | 6233502 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 19496978 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 10125608 | A-G | Homo | INTRON | |
| SBS | Chr11 | 26087384 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29448489 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 4547566 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8823341 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 4880916 | 4881264 | 348 | |
| Deletion | Chr12 | 7614986 | 7614988 | 2 | |
| Deletion | Chr11 | 8004385 | 8004399 | 14 | |
| Deletion | Chr1 | 9646970 | 9646985 | 15 | OsKitaake01g123400 |
| Deletion | Chr5 | 12746916 | 12746932 | 16 | |
| Deletion | Chr9 | 16986001 | 17132000 | 145999 | 21 |
| Deletion | Chr8 | 18939224 | 18939225 | 1 | |
| Deletion | Chr4 | 19628001 | 19634000 | 5999 | 2 |
| Deletion | Chr12 | 26723647 | 26723648 | 1 | |
| Deletion | Chr8 | 29097851 | 29097853 | 2 | |
| Deletion | Chr4 | 32244623 | 32244624 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 32291189 | 32291191 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 7598672 | 7783274 | |
| Inversion | Chr7 | 7598706 | 7783280 | |
| Inversion | Chr9 | 16557086 | 17128797 | OsKitaake09g120900 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 21970086 | Chr3 | 16431244 | OsKitaake10g177700 |
| Translocation | Chr10 | 21970103 | Chr3 | 16430375 | OsKitaake10g177700 |
| Translocation | Chr12 | 21983106 | Chr9 | 461930 | 2 |
| Translocation | Chr12 | 21983115 | Chr9 | 461139 | OsKitaake12g172500 |