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Mutant Information

Mutant Name	FN425-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN425-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4771084	A-G	Hetero	INTERGENIC
SBS	Chr1	5836912	A-G	Hetero	INTERGENIC
SBS	Chr1	5967758	C-A	Hetero	INTERGENIC
SBS	Chr1	7477171	G-C	Hetero	STOP_LOST	OsKitaake01g093600
SBS	Chr1	8659402	C-T	Hetero	INTERGENIC
SBS	Chr1	15161213	C-A	Hetero	INTERGENIC
SBS	Chr2	3671755	C-T	Hetero	INTERGENIC
SBS	Chr2	14315846	G-T	Hetero	INTERGENIC
SBS	Chr2	18876327	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	24286094	C-T	Homo	INTERGENIC
SBS	Chr3	1676142	A-T	Hetero	INTRON
SBS	Chr3	9921485	G-A	Hetero	INTERGENIC
SBS	Chr3	9921486	G-T	Hetero	INTERGENIC
SBS	Chr3	15468779	C-G	Hetero	INTERGENIC
SBS	Chr3	21964864	T-C	Hetero	INTERGENIC
SBS	Chr3	28687639	T-C	Hetero	INTERGENIC
SBS	Chr3	34441920	C-T	Homo	INTRON
SBS	Chr3	34441921	A-T	Homo	INTRON
SBS	Chr3	34441925	C-G	Homo	INTRON
SBS	Chr4	10370437	A-G	Hetero	INTERGENIC
SBS	Chr4	25275182	T-G	Homo	INTERGENIC
SBS	Chr5	20610674	T-A	Homo	INTERGENIC
SBS	Chr5	20916175	C-T	Homo	INTERGENIC
SBS	Chr6	1651594	G-C	Hetero	INTRON
SBS	Chr6	14683935	G-C	Homo	INTERGENIC
SBS	Chr6	22736891	A-G	Hetero	INTERGENIC
SBS	Chr8	8208502	G-T	Homo	UTR_3_PRIME
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr9	18304402	T-G	Hetero	INTRON
SBS	Chr10	23885846	A-T	Homo	INTRON
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr12	11437772	C-T	Homo	INTERGENIC
SBS	Chr12	12701066	C-T	Hetero	INTERGENIC
SBS	Chr12	19915265	A-T	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	89001	148000	58999	3
Deletion	Chr6	1649545	1649546	1
Deletion	Chr12	1982318	1982319	1
Deletion	Chr9	2731161	2731164	3
Deletion	Chr7	7143797	7143799	2
Deletion	Chr10	8790393	8790403	10
Deletion	Chr8	10683908	10683912	4
Deletion	Chr12	12254580	12254581	1
Deletion	Chr8	13041255	13041256	1
Deletion	Chr7	13718001	13730000	11999
Deletion	Chr9	14509920	14509922	2
Deletion	Chr9	14590001	14614000	23999	3
Deletion	Chr2	18402626	18402628	2
Deletion	Chr3	21088143	21088149	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr2	22253986	22253989	2
Insertion	Chr6	8654687	8654690	2
Insertion	Chr11	6420656	6420659	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10102581	10385907
Inversion	Chr6	10385916	10458354
Inversion	Chr3	34413123	34693291	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	10262958	Chr2	19798592	OsKitaake02g193200
Translocation	Chr6	10263175	Chr2	19798589	OsKitaake02g193200
Translocation	Chr9	14589782	Chr2	28940406	OsKitaake02g291200
Translocation	Chr9	14616424	Chr2	28940401	OsKitaake02g291200
Translocation	Chr8	17928329	Chr6	30249142	OsKitaake06g283500
Translocation	Chr3	34413211	Chr1	38160302	2
Translocation	Chr3	34693304	Chr1	38160294	2