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Mutant Information |
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Mutant Name | FN4253-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4253-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 6814529 | G-T | Hetero | START_GAINED | |
SBS | Chr1 | 6991786 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 22051934 | T-C | Hetero | INTERGENIC | |
SBS | Chr1 | 22151140 | T-A | Hetero | INTERGENIC | |
SBS | Chr1 | 38176621 | A-G | Hetero | INTRON | |
SBS | Chr2 | 11348389 | T-A | Hetero | INTERGENIC | |
SBS | Chr2 | 30441171 | C-A | Hetero | INTERGENIC | |
SBS | Chr4 | 195634 | A-T | Hetero | INTRON | |
SBS | Chr4 | 5872880 | T-C | Hetero | INTRON | |
SBS | Chr4 | 6656482 | A-C | Hetero | INTERGENIC | |
SBS | Chr4 | 7703503 | A-C | Hetero | INTERGENIC | |
SBS | Chr4 | 10380792 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 11554011 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 14781430 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 24356153 | C-A | Homo | INTERGENIC | |
SBS | Chr5 | 2033469 | C-G | Hetero | INTERGENIC | |
SBS | Chr6 | 29439194 | G-C | Homo | INTRON | |
SBS | Chr7 | 25505077 | G-A | Hetero | INTERGENIC | |
SBS | Chr8 | 15578811 | C-A | Hetero | INTERGENIC | |
SBS | Chr8 | 28666109 | G-T | Homo | INTERGENIC | |
SBS | Chr8 | 28666110 | C-T | Homo | INTERGENIC | |
SBS | Chr9 | 12662529 | C-T | Hetero | INTERGENIC | |
SBS | Chr9 | 16853483 | C-A | Hetero | INTERGENIC | |
SBS | Chr10 | 6819903 | C-A | Hetero | INTERGENIC | |
SBS | Chr10 | 8287720 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 22392918 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g183900 |
SBS | Chr11 | 4367975 | A-T | Hetero | INTERGENIC | |
SBS | Chr11 | 5487722 | G-T | Homo | INTERGENIC | |
SBS | Chr12 | 14266542 | C-G | Hetero | INTERGENIC | |
SBS | Chr12 | 23761810 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g191300 |
SBS | Chr12 | 23761811 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g191300 |
Deletions: 12
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr5 | 2032220 | 2032225 | 4 | |
Insertion | Chr5 | 23342413 | 23342417 | 3 | |
Insertion | Chr7 | 8498072 | 8498074 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr3 | 11923177 | 11929931 | 2 |
Inversion | Chr1 | 18374209 | 19279323 | OsKitaake01g192800 |
Inversion | Chr1 | 18374218 | 19279343 | OsKitaake01g192800 |
Inversion | Chr1 | 21961432 | 22303351 | OsKitaake01g211300 |