Search Kitaake



Mutant Information 

Mutant NameFN4253-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4253-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr16814529G-THeteroSTART_GAINED
SBS  Chr16991786C-THeteroINTERGENIC
SBS  Chr122051934T-CHeteroINTERGENIC
SBS  Chr122151140T-AHeteroINTERGENIC
SBS  Chr138176621A-GHeteroINTRON
SBS  Chr211348389T-AHeteroINTERGENIC
SBS  Chr230441171C-AHeteroINTERGENIC
SBS  Chr4195634A-THeteroINTRON
SBS  Chr45872880T-CHeteroINTRON
SBS  Chr46656482A-CHeteroINTERGENIC
SBS  Chr47703503A-CHeteroINTERGENIC
SBS  Chr410380792C-THeteroINTERGENIC
SBS  Chr411554011G-AHeteroINTERGENIC
SBS  Chr414781430G-AHeteroINTERGENIC
SBS  Chr424356153C-AHomoINTERGENIC
SBS  Chr52033469C-GHeteroINTERGENIC
SBS  Chr629439194G-CHomoINTRON
SBS  Chr725505077G-AHeteroINTERGENIC
SBS  Chr815578811C-AHeteroINTERGENIC
SBS  Chr828666109G-THomoINTERGENIC
SBS  Chr828666110C-THomoINTERGENIC
SBS  Chr912662529C-THeteroINTERGENIC
SBS  Chr916853483C-AHeteroINTERGENIC
SBS  Chr106819903C-AHeteroINTERGENIC
SBS  Chr108287720G-AHeteroINTERGENIC
SBS  Chr1022392918G-CHeteroNON_SYNONYMOUS_CODINGOsKitaake10g183900
SBS  Chr114367975A-THeteroINTERGENIC
SBS  Chr115487722G-THomoINTERGENIC
SBS  Chr1214266542C-GHeteroINTERGENIC
SBS  Chr1223761810G-THomoNON_SYNONYMOUS_CODINGOsKitaake12g191300
SBS  Chr1223761811G-THomoNON_SYNONYMOUS_CODINGOsKitaake12g191300

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr2397081639708182
Deletion  Chr1552426155242621
Deletion  Chr2593498959349901
Deletion  Chr3826296082629688
Deletion  Chr28948457894846710
Deletion  Chr9990796899079691
Deletion  Chr1111904826119048271
Deletion  Chr612882510128825122
Deletion  Chr7156717211567173110
Deletion  Chr1121103238211032402
Deletion  Chr1219920012204800055999
Deletion  Chr329907500299075088

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr5203222020322254
Insertion  Chr523342413233424173
Insertion  Chr7849807284980741

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr311923177119299312
Inversion  Chr11837420919279323OsKitaake01g192800
Inversion  Chr11837421819279343OsKitaake01g192800
Inversion  Chr12196143222303351OsKitaake01g211300