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Mutant Information

Mutant Name	FN4255-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4255-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14046387 T-C Hetero INTERGENIC
SBS Chr1 26195015 G-C Hetero INTRON
SBS Chr1 35572551 C-T Hetero INTERGENIC
SBS Chr1 44252869 T-A Hetero INTRON
SBS Chr2 7340369 C-A Hetero INTERGENIC
SBS Chr2 26904942 C-A Hetero INTERGENIC
SBS Chr2 28988243 C-A Homo INTERGENIC
SBS Chr2 32342020 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g330400
SBS Chr3 729121 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g011400
SBS Chr3 21914180 C-T Homo INTERGENIC
SBS Chr4 8564072 G-A Homo INTERGENIC
SBS Chr6 2655613 T-A Hetero INTERGENIC
SBS Chr6 24171645 G-A Hetero INTERGENIC
SBS Chr7 16722168 C-T Hetero INTERGENIC
SBS Chr8 7422169 A-G Hetero INTERGENIC
SBS Chr8 9906884 A-C Hetero INTERGENIC
SBS Chr8 10255481 A-T Hetero INTERGENIC
SBS Chr8 12062479 C-G Hetero INTERGENIC
SBS Chr8 12072061 A-G Hetero INTERGENIC
SBS Chr8 12103743 G-T Hetero INTERGENIC
SBS Chr8 12103744 G-T Hetero INTERGENIC
SBS Chr8 13495515 A-T Hetero INTERGENIC
SBS Chr8 16549326 T-C Hetero UTR_5_PRIME
SBS Chr9 4626263 A-G Hetero INTERGENIC
SBS Chr9 8553505 G-A Homo INTERGENIC
SBS Chr10 9666828 A-G Hetero INTRON
SBS Chr10 10686917 A-G Homo INTERGENIC
SBS Chr11 26824862 A-G Hetero INTERGENIC
SBS Chr12 14478116 C-T Hetero INTERGENIC
SBS Chr12 18459042 C-G Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3589580 3589585 5
Deletion Chr1 6797048 6797049 1
Deletion Chr12 8728379 8728385 6
Deletion Chr8 12063001 12072000 8999
Deletion Chr4 20715365 20715380 15
Deletion Chr1 25818001 26062000 243999 20
Deletion Chr7 28959171 28959188 17
Deletion Chr5 29421405 29421408 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 1452390 1452392 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 13631981 13632598

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14046387	T-C	Hetero	INTERGENIC
SBS	Chr1	26195015	G-C	Hetero	INTRON
SBS	Chr1	35572551	C-T	Hetero	INTERGENIC
SBS	Chr1	44252869	T-A	Hetero	INTRON
SBS	Chr2	7340369	C-A	Hetero	INTERGENIC
SBS	Chr2	26904942	C-A	Hetero	INTERGENIC
SBS	Chr2	28988243	C-A	Homo	INTERGENIC
SBS	Chr2	32342020	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g330400
SBS	Chr3	729121	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g011400
SBS	Chr3	21914180	C-T	Homo	INTERGENIC
SBS	Chr4	8564072	G-A	Homo	INTERGENIC
SBS	Chr6	2655613	T-A	Hetero	INTERGENIC
SBS	Chr6	24171645	G-A	Hetero	INTERGENIC
SBS	Chr7	16722168	C-T	Hetero	INTERGENIC
SBS	Chr8	7422169	A-G	Hetero	INTERGENIC
SBS	Chr8	9906884	A-C	Hetero	INTERGENIC
SBS	Chr8	10255481	A-T	Hetero	INTERGENIC
SBS	Chr8	12062479	C-G	Hetero	INTERGENIC
SBS	Chr8	12072061	A-G	Hetero	INTERGENIC
SBS	Chr8	12103743	G-T	Hetero	INTERGENIC
SBS	Chr8	12103744	G-T	Hetero	INTERGENIC
SBS	Chr8	13495515	A-T	Hetero	INTERGENIC
SBS	Chr8	16549326	T-C	Hetero	UTR_5_PRIME
SBS	Chr9	4626263	A-G	Hetero	INTERGENIC
SBS	Chr9	8553505	G-A	Homo	INTERGENIC
SBS	Chr10	9666828	A-G	Hetero	INTRON
SBS	Chr10	10686917	A-G	Homo	INTERGENIC
SBS	Chr11	26824862	A-G	Hetero	INTERGENIC
SBS	Chr12	14478116	C-T	Hetero	INTERGENIC
SBS	Chr12	18459042	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3589580	3589585	5
Deletion	Chr1	6797048	6797049	1
Deletion	Chr12	8728379	8728385	6
Deletion	Chr8	12063001	12072000	8999
Deletion	Chr4	20715365	20715380	15
Deletion	Chr1	25818001	26062000	243999	20
Deletion	Chr7	28959171	28959188	17
Deletion	Chr5	29421405	29421408	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13631981	13632598

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes