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Mutant Information 

Mutant NameFN4258-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4258-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr15200399C-THeteroINTERGENIC
SBS  Chr110574954C-THeteroINTERGENIC
SBS  Chr114254940C-GHeteroINTERGENIC
SBS  Chr125801627G-CHeteroINTERGENIC
SBS  Chr127153873G-AHeteroNON_SYNONYMOUS_CODINGOsKitaake01g264400
SBS  Chr127153874G-THeteroNON_SYNONYMOUS_CODINGOsKitaake01g264400
SBS  Chr2313300G-AHeteroINTRON
SBS  Chr216523430A-GHomoINTERGENIC
SBS  Chr216523441A-THomoINTERGENIC
SBS  Chr216539359T-GHomoNON_SYNONYMOUS_CODINGOsKitaake02g169100
SBS  Chr222670513C-GHeteroUTR_3_PRIME
SBS  Chr231491995T-CHeteroINTERGENIC
SBS  Chr36158640T-CHeteroINTRON
SBS  Chr36491994A-GHeteroINTERGENIC
SBS  Chr314774732C-THeteroINTERGENIC
SBS  Chr324993245G-AHomoINTERGENIC
SBS  Chr327474041T-CHeteroINTERGENIC
SBS  Chr333569320G-AHeteroINTRON
SBS  Chr424196387A-THeteroINTERGENIC
SBS  Chr533963G-AHomoINTERGENIC
SBS  Chr54243477T-AHeteroINTERGENIC
SBS  Chr57693802A-GHeteroINTERGENIC
SBS  Chr66171753T-AHeteroINTERGENIC
SBS  Chr612811870T-GHeteroINTERGENIC
SBS  Chr614891772C-THomoINTERGENIC
SBS  Chr616941757G-AHomoINTERGENIC
SBS  Chr619917581G-THeteroINTERGENIC
SBS  Chr626271144G-AHomoINTERGENIC
SBS  Chr72601363T-AHeteroINTERGENIC
SBS  Chr79895703A-GHeteroINTERGENIC
SBS  Chr713659502G-AHeteroINTERGENIC
SBS  Chr728525935C-THeteroINTERGENIC
SBS  Chr729419281G-AHomoINTRON
SBS  Chr826304380C-THeteroNON_SYNONYMOUS_CODINGOsKitaake08g210800
SBS  Chr826304388A-THeteroNON_SYNONYMOUS_CODINGOsKitaake08g210800
SBS  Chr827201665C-THomoINTRON
SBS  Chr828832600C-THeteroINTERGENIC
SBS  Chr93340351C-THeteroINTERGENIC
SBS  Chr98584094A-GHeteroINTERGENIC
SBS  Chr98804850A-THeteroINTERGENIC
SBS  Chr1010389505G-THeteroINTERGENIC
SBS  Chr1015647758G-AHeteroINTERGENIC
SBS  Chr1023980151T-CHeteroINTRON
SBS  Chr116421055T-CHeteroSYNONYMOUS_CODING
SBS  Chr1111886891C-THomoINTERGENIC
SBS  Chr1127543934A-GHeteroINTERGENIC
SBS  Chr1221943717A-CHeteroINTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr126836116836143
Deletion  Chr71243829124385425
Deletion  Chr723590012385000259993
Deletion  Chr3949972394997252OsKitaake03g128800
Deletion  Chr598200019845000249992
Deletion  Chr211810143118101474
Deletion  Chr413268440132684411
Deletion  Chr1014825185148251949
Deletion  Chr52057500120608000329993
Deletion  Chr12246810012470400022999OsKitaake12g200400
Deletion  Chr1125511642255116497
Deletion  Chr1127955143279551485
Deletion  Chr33323100133258000269993

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr132377250323772532
Insertion  Chr310077559100775644
Insertion  Chr325952671259526742
Insertion  Chr714314232143142341

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr41627803116678273
Inversion  Chr122431136625279383
Inversion  Chr726895902276684472
Inversion  Chr726895920276684592

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr32157703Chr142759560OsKitaake03g030800
Translocation  Chr32157708Chr1427509032
Translocation  Chr1213584415Chr416533751OsKitaake12g112100
Translocation  Chr1015895343Chr7266627932
Translocation  Chr1221203646Chr417008429
Translocation  Chr1223828450Chr416146911