Search Kitaake
Mutant Information |
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Mutant Name | FN4258-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4258-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 5200399 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 10574954 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 14254940 | C-G | Hetero | INTERGENIC | |
SBS | Chr1 | 25801627 | G-C | Hetero | INTERGENIC | |
SBS | Chr1 | 27153873 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g264400 |
SBS | Chr1 | 27153874 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g264400 |
SBS | Chr2 | 313300 | G-A | Hetero | INTRON | |
SBS | Chr2 | 16523430 | A-G | Homo | INTERGENIC | |
SBS | Chr2 | 16523441 | A-T | Homo | INTERGENIC | |
SBS | Chr2 | 16539359 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g169100 |
SBS | Chr2 | 22670513 | C-G | Hetero | UTR_3_PRIME | |
SBS | Chr2 | 31491995 | T-C | Hetero | INTERGENIC | |
SBS | Chr3 | 6158640 | T-C | Hetero | INTRON | |
SBS | Chr3 | 6491994 | A-G | Hetero | INTERGENIC | |
SBS | Chr3 | 14774732 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 24993245 | G-A | Homo | INTERGENIC | |
SBS | Chr3 | 27474041 | T-C | Hetero | INTERGENIC | |
SBS | Chr3 | 33569320 | G-A | Hetero | INTRON | |
SBS | Chr4 | 24196387 | A-T | Hetero | INTERGENIC | |
SBS | Chr5 | 33963 | G-A | Homo | INTERGENIC | |
SBS | Chr5 | 4243477 | T-A | Hetero | INTERGENIC | |
SBS | Chr5 | 7693802 | A-G | Hetero | INTERGENIC | |
SBS | Chr6 | 6171753 | T-A | Hetero | INTERGENIC | |
SBS | Chr6 | 12811870 | T-G | Hetero | INTERGENIC | |
SBS | Chr6 | 14891772 | C-T | Homo | INTERGENIC | |
SBS | Chr6 | 16941757 | G-A | Homo | INTERGENIC | |
SBS | Chr6 | 19917581 | G-T | Hetero | INTERGENIC | |
SBS | Chr6 | 26271144 | G-A | Homo | INTERGENIC | |
SBS | Chr7 | 2601363 | T-A | Hetero | INTERGENIC | |
SBS | Chr7 | 9895703 | A-G | Hetero | INTERGENIC | |
SBS | Chr7 | 13659502 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 28525935 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 29419281 | G-A | Homo | INTRON | |
SBS | Chr8 | 26304380 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g210800 |
SBS | Chr8 | 26304388 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g210800 |
SBS | Chr8 | 27201665 | C-T | Homo | INTRON | |
SBS | Chr8 | 28832600 | C-T | Hetero | INTERGENIC | |
SBS | Chr9 | 3340351 | C-T | Hetero | INTERGENIC | |
SBS | Chr9 | 8584094 | A-G | Hetero | INTERGENIC | |
SBS | Chr9 | 8804850 | A-T | Hetero | INTERGENIC | |
SBS | Chr10 | 10389505 | G-T | Hetero | INTERGENIC | |
SBS | Chr10 | 15647758 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 23980151 | T-C | Hetero | INTRON | |
SBS | Chr11 | 6421055 | T-C | Hetero | SYNONYMOUS_CODING | |
SBS | Chr11 | 11886891 | C-T | Homo | INTERGENIC | |
SBS | Chr11 | 27543934 | A-G | Hetero | INTERGENIC | |
SBS | Chr12 | 21943717 | A-C | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr12 | 683611 | 683614 | 3 | |
Deletion | Chr7 | 1243829 | 1243854 | 25 | |
Deletion | Chr7 | 2359001 | 2385000 | 25999 | 3 |
Deletion | Chr3 | 9499723 | 9499725 | 2 | OsKitaake03g128800 |
Deletion | Chr5 | 9820001 | 9845000 | 24999 | 2 |
Deletion | Chr2 | 11810143 | 11810147 | 4 | |
Deletion | Chr4 | 13268440 | 13268441 | 1 | |
Deletion | Chr10 | 14825185 | 14825194 | 9 | |
Deletion | Chr5 | 20575001 | 20608000 | 32999 | 3 |
Deletion | Chr12 | 24681001 | 24704000 | 22999 | OsKitaake12g200400 |
Deletion | Chr11 | 25511642 | 25511649 | 7 | |
Deletion | Chr11 | 27955143 | 27955148 | 5 | |
Deletion | Chr3 | 33231001 | 33258000 | 26999 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 32377250 | 32377253 | 2 | |
Insertion | Chr3 | 10077559 | 10077564 | 4 | |
Insertion | Chr3 | 25952671 | 25952674 | 2 | |
Insertion | Chr7 | 14314232 | 14314234 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr4 | 16278031 | 16678273 | |
Inversion | Chr12 | 24311366 | 25279383 | |
Inversion | Chr7 | 26895902 | 27668447 | 2 |
Inversion | Chr7 | 26895920 | 27668459 | 2 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr3 | 2157703 | Chr1 | 42759560 | OsKitaake03g030800 |
Translocation | Chr3 | 2157708 | Chr1 | 42750903 | 2 |
Translocation | Chr12 | 13584415 | Chr4 | 16533751 | OsKitaake12g112100 |
Translocation | Chr10 | 15895343 | Chr7 | 26662793 | 2 |
Translocation | Chr12 | 21203646 | Chr4 | 17008429 | |
Translocation | Chr12 | 23828450 | Chr4 | 16146911 |