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Mutant Information

Mutant Name	FN426-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN426-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4426670 T-A Hetero INTRON
SBS Chr2 74839 A-G Homo INTERGENIC
SBS Chr2 30073865 G-C Hetero INTERGENIC
SBS Chr2 31330807 G-A Hetero INTRON
SBS Chr3 4592997 C-T Hetero INTERGENIC
SBS Chr4 666451 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 19521638 A-C Hetero INTRON
SBS Chr4 34901981 G-A Hetero INTRON
SBS Chr5 291076 A-T Hetero INTRON
SBS Chr5 291077 A-T Hetero INTRON
SBS Chr5 7771255 A-G Homo INTRON
SBS Chr6 13788687 A-T Homo INTERGENIC
SBS Chr7 5211096 G-A Homo INTERGENIC
SBS Chr7 16359170 A-T Hetero INTERGENIC
SBS Chr7 17789217 G-A Hetero INTERGENIC
SBS Chr7 18004810 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 18363911 A-C Hetero INTERGENIC
SBS Chr7 27196615 C-T Hetero INTERGENIC
SBS Chr8 1367691 G-A Homo SYNONYMOUS_CODING
SBS Chr9 6771347 C-T Homo INTERGENIC
SBS Chr9 9326371 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g056000
SBS Chr11 20358789 G-C Homo INTRON

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 712001 771000 58999 17
Deletion Chr1 3600368 3600371 3
Deletion Chr3 3909779 3909783 4
Deletion Chr1 5324061 5324063 2
Deletion Chr5 5977325 5977326 1
Deletion Chr3 8109422 8109423 1
Deletion Chr3 8163789 8163798 9 OsKitaake03g113000
Deletion Chr12 8855863 8855872 9
Deletion Chr3 9112001 9143000 30999 OsKitaake03g124900
Deletion Chr4 13740348 13740349 1
Deletion Chr4 13978891 13978907 16
Deletion Chr8 15863396 15863403 7
Deletion Chr4 16916563 16916565 2
Deletion Chr8 17119630 17119632 2
Deletion Chr4 20250587 20250588 1 OsKitaake04g107400
Deletion Chr1 21592268 21592269 1
Deletion Chr8 23772026 23772031 5
Deletion Chr12 23928446 23928447 1
Deletion Chr12 25106580 25106588 8
Deletion Chr5 27226001 27290000 63999 7
Deletion Chr2 32352632 32352636 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 18486759 18486762 2
Insertion Chr8 4831893 4831896 2
Insertion Chr8 11486230 11486233 2
Insertion Chr12 10596599 10596602 2
Insertion Chr5 12464015 12464017 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 22570613 22655298 2
Inversion Chr8 23272963 23274966 OsKitaake08g179400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 22655349 Chr3 28140484 2
Translocation Chr8 22655806 Chr3 28140492 2
Translocation Chr8 22655827 Chr5 281323 2
Translocation Chr8 23274965 Chr5 707732 OsKitaake08g179400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4426670	T-A	Hetero	INTRON
SBS	Chr2	74839	A-G	Homo	INTERGENIC
SBS	Chr2	30073865	G-C	Hetero	INTERGENIC
SBS	Chr2	31330807	G-A	Hetero	INTRON
SBS	Chr3	4592997	C-T	Hetero	INTERGENIC
SBS	Chr4	666451	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	19521638	A-C	Hetero	INTRON
SBS	Chr4	34901981	G-A	Hetero	INTRON
SBS	Chr5	291076	A-T	Hetero	INTRON
SBS	Chr5	291077	A-T	Hetero	INTRON
SBS	Chr5	7771255	A-G	Homo	INTRON
SBS	Chr6	13788687	A-T	Homo	INTERGENIC
SBS	Chr7	5211096	G-A	Homo	INTERGENIC
SBS	Chr7	16359170	A-T	Hetero	INTERGENIC
SBS	Chr7	17789217	G-A	Hetero	INTERGENIC
SBS	Chr7	18004810	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	18363911	A-C	Hetero	INTERGENIC
SBS	Chr7	27196615	C-T	Hetero	INTERGENIC
SBS	Chr8	1367691	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	6771347	C-T	Homo	INTERGENIC
SBS	Chr9	9326371	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g056000
SBS	Chr11	20358789	G-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	712001	771000	58999	17
Deletion	Chr1	3600368	3600371	3
Deletion	Chr3	3909779	3909783	4
Deletion	Chr1	5324061	5324063	2
Deletion	Chr5	5977325	5977326	1
Deletion	Chr3	8109422	8109423	1
Deletion	Chr3	8163789	8163798	9	OsKitaake03g113000
Deletion	Chr12	8855863	8855872	9
Deletion	Chr3	9112001	9143000	30999	OsKitaake03g124900
Deletion	Chr4	13740348	13740349	1
Deletion	Chr4	13978891	13978907	16
Deletion	Chr8	15863396	15863403	7
Deletion	Chr4	16916563	16916565	2
Deletion	Chr8	17119630	17119632	2
Deletion	Chr4	20250587	20250588	1	OsKitaake04g107400
Deletion	Chr1	21592268	21592269	1
Deletion	Chr8	23772026	23772031	5
Deletion	Chr12	23928446	23928447	1
Deletion	Chr12	25106580	25106588	8
Deletion	Chr5	27226001	27290000	63999	7
Deletion	Chr2	32352632	32352636	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	22570613	22655298	2
Inversion	Chr8	23272963	23274966	OsKitaake08g179400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes