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Mutant Information

Mutant Name	FN4260-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4260-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 61

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2553095 G-A Homo INTERGENIC
SBS Chr1 13325780 C-T Hetero INTERGENIC
SBS Chr1 14549307 T-C Hetero INTERGENIC
SBS Chr1 24829185 G-A Homo INTERGENIC
SBS Chr1 26691445 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g259500
SBS Chr1 28423519 G-T Hetero INTERGENIC
SBS Chr1 44191195 G-A Homo SYNONYMOUS_CODING
SBS Chr2 2990676 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g042601
SBS Chr2 4295609 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g060500
SBS Chr2 22187487 C-A Hetero INTERGENIC
SBS Chr2 24031048 A-C Hetero INTRON
SBS Chr2 31660391 C-T Hetero INTERGENIC
SBS Chr2 35987831 A-G Hetero INTRON
SBS Chr3 16102221 T-C Hetero INTERGENIC
SBS Chr3 19276908 A-C Hetero INTERGENIC
SBS Chr3 19680871 G-A Hetero INTERGENIC
SBS Chr3 25514682 C-A Hetero INTERGENIC
SBS Chr3 26689459 T-A Hetero INTERGENIC
SBS Chr4 1728682 T-C Hetero INTERGENIC
SBS Chr4 2800743 G-T Hetero INTERGENIC
SBS Chr4 4000559 T-G Homo INTERGENIC
SBS Chr4 7602719 G-A Hetero INTERGENIC
SBS Chr4 7835381 C-T Hetero INTERGENIC
SBS Chr4 8747664 G-A Homo INTERGENIC
SBS Chr4 9845956 T-C Hetero INTERGENIC
SBS Chr4 12981453 C-T Hetero INTERGENIC
SBS Chr4 13801651 C-A Hetero INTERGENIC
SBS Chr4 31630074 C-T Hetero INTERGENIC
SBS Chr4 32633544 A-T Hetero INTERGENIC
SBS Chr5 1264940 A-T Hetero INTRON
SBS Chr5 5593719 A-T Hetero INTERGENIC
SBS Chr5 6775134 C-A Hetero INTERGENIC
SBS Chr5 28776653 A-T Hetero INTERGENIC
SBS Chr6 123262 G-T Hetero INTERGENIC
SBS Chr6 11003029 C-A Hetero INTERGENIC
SBS Chr7 15995527 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g132300
SBS Chr7 16878676 A-G Hetero INTERGENIC
SBS Chr7 18577047 G-C Hetero INTERGENIC
SBS Chr7 22019459 C-A Hetero INTRON
SBS Chr7 28099016 C-A Homo INTRON
SBS Chr8 463940 G-A Hetero UTR_3_PRIME
SBS Chr8 5281852 C-T Hetero INTERGENIC
SBS Chr8 5540221 T-A Hetero INTERGENIC
SBS Chr8 7809302 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 16824817 G-A Hetero INTERGENIC
SBS Chr8 19826941 A-G Hetero INTERGENIC
SBS Chr9 2406341 C-T Hetero INTERGENIC
SBS Chr9 6938740 C-T Hetero INTERGENIC
SBS Chr9 10805628 T-A Hetero INTERGENIC
SBS Chr10 12018136 G-A Homo INTERGENIC
SBS Chr10 18503021 G-A Hetero INTRON
SBS Chr11 14218514 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g118800
SBS Chr11 15202553 A-G Hetero INTERGENIC
SBS Chr11 28320495 G-T Homo INTERGENIC
SBS Chr12 391775 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 3231664 G-T Hetero INTERGENIC
SBS Chr12 7360625 C-T Hetero INTERGENIC
SBS Chr12 13007704 C-T Hetero INTERGENIC
SBS Chr12 14411557 A-G Hetero INTERGENIC
SBS Chr12 14730392 G-A Hetero INTERGENIC
SBS Chr12 14730393 C-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2138793 2138795 2
Deletion Chr3 2679880 2679889 9
Deletion Chr1 2995840 2995848 8
Deletion Chr5 4895001 4924000 28999 2
Deletion Chr1 7875482 7875494 12
Deletion Chr4 8076318 8076321 3 OsKitaake04g042200
Deletion Chr8 8776272 8776273 1
Deletion Chr4 9076412 9076413 1
Deletion Chr4 10646703 10646704 1
Deletion Chr12 11164001 11232000 67999 OsKitaake12g102200
Deletion Chr6 11314811 11314823 12
Deletion Chr2 11930753 11930754 1
Deletion Chr7 13622084 13622094 10
Deletion Chr11 13824792 13824797 5
Deletion Chr10 22680916 22680918 2
Deletion Chr2 30453388 30453395 7
Deletion Chr4 31770294 31770306 12
Deletion Chr3 37594470 37594479 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32126830 32126832 1 OsKitaake01g323900
Insertion Chr8 433521 433525 3
Insertion Chr1 6413509 6413512 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 11231486 Chr8 14650757 OsKitaake08g115100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2553095	G-A	Homo	INTERGENIC
SBS	Chr1	13325780	C-T	Hetero	INTERGENIC
SBS	Chr1	14549307	T-C	Hetero	INTERGENIC
SBS	Chr1	24829185	G-A	Homo	INTERGENIC
SBS	Chr1	26691445	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g259500
SBS	Chr1	28423519	G-T	Hetero	INTERGENIC
SBS	Chr1	44191195	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	2990676	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g042601
SBS	Chr2	4295609	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g060500
SBS	Chr2	22187487	C-A	Hetero	INTERGENIC
SBS	Chr2	24031048	A-C	Hetero	INTRON
SBS	Chr2	31660391	C-T	Hetero	INTERGENIC
SBS	Chr2	35987831	A-G	Hetero	INTRON
SBS	Chr3	16102221	T-C	Hetero	INTERGENIC
SBS	Chr3	19276908	A-C	Hetero	INTERGENIC
SBS	Chr3	19680871	G-A	Hetero	INTERGENIC
SBS	Chr3	25514682	C-A	Hetero	INTERGENIC
SBS	Chr3	26689459	T-A	Hetero	INTERGENIC
SBS	Chr4	1728682	T-C	Hetero	INTERGENIC
SBS	Chr4	2800743	G-T	Hetero	INTERGENIC
SBS	Chr4	4000559	T-G	Homo	INTERGENIC
SBS	Chr4	7602719	G-A	Hetero	INTERGENIC
SBS	Chr4	7835381	C-T	Hetero	INTERGENIC
SBS	Chr4	8747664	G-A	Homo	INTERGENIC
SBS	Chr4	9845956	T-C	Hetero	INTERGENIC
SBS	Chr4	12981453	C-T	Hetero	INTERGENIC
SBS	Chr4	13801651	C-A	Hetero	INTERGENIC
SBS	Chr4	31630074	C-T	Hetero	INTERGENIC
SBS	Chr4	32633544	A-T	Hetero	INTERGENIC
SBS	Chr5	1264940	A-T	Hetero	INTRON
SBS	Chr5	5593719	A-T	Hetero	INTERGENIC
SBS	Chr5	6775134	C-A	Hetero	INTERGENIC
SBS	Chr5	28776653	A-T	Hetero	INTERGENIC
SBS	Chr6	123262	G-T	Hetero	INTERGENIC
SBS	Chr6	11003029	C-A	Hetero	INTERGENIC
SBS	Chr7	15995527	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g132300
SBS	Chr7	16878676	A-G	Hetero	INTERGENIC
SBS	Chr7	18577047	G-C	Hetero	INTERGENIC
SBS	Chr7	22019459	C-A	Hetero	INTRON
SBS	Chr7	28099016	C-A	Homo	INTRON
SBS	Chr8	463940	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	5281852	C-T	Hetero	INTERGENIC
SBS	Chr8	5540221	T-A	Hetero	INTERGENIC
SBS	Chr8	7809302	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	16824817	G-A	Hetero	INTERGENIC
SBS	Chr8	19826941	A-G	Hetero	INTERGENIC
SBS	Chr9	2406341	C-T	Hetero	INTERGENIC
SBS	Chr9	6938740	C-T	Hetero	INTERGENIC
SBS	Chr9	10805628	T-A	Hetero	INTERGENIC
SBS	Chr10	12018136	G-A	Homo	INTERGENIC
SBS	Chr10	18503021	G-A	Hetero	INTRON
SBS	Chr11	14218514	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g118800
SBS	Chr11	15202553	A-G	Hetero	INTERGENIC
SBS	Chr11	28320495	G-T	Homo	INTERGENIC
SBS	Chr12	391775	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	3231664	G-T	Hetero	INTERGENIC
SBS	Chr12	7360625	C-T	Hetero	INTERGENIC
SBS	Chr12	13007704	C-T	Hetero	INTERGENIC
SBS	Chr12	14411557	A-G	Hetero	INTERGENIC
SBS	Chr12	14730392	G-A	Hetero	INTERGENIC
SBS	Chr12	14730393	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2138793	2138795	2
Deletion	Chr3	2679880	2679889	9
Deletion	Chr1	2995840	2995848	8
Deletion	Chr5	4895001	4924000	28999	2
Deletion	Chr1	7875482	7875494	12
Deletion	Chr4	8076318	8076321	3	OsKitaake04g042200
Deletion	Chr8	8776272	8776273	1
Deletion	Chr4	9076412	9076413	1
Deletion	Chr4	10646703	10646704	1
Deletion	Chr12	11164001	11232000	67999	OsKitaake12g102200
Deletion	Chr6	11314811	11314823	12
Deletion	Chr2	11930753	11930754	1
Deletion	Chr7	13622084	13622094	10
Deletion	Chr11	13824792	13824797	5
Deletion	Chr10	22680916	22680918	2
Deletion	Chr2	30453388	30453395	7
Deletion	Chr4	31770294	31770306	12
Deletion	Chr3	37594470	37594479	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11231486	Chr8	14650757	OsKitaake08g115100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes