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Mutant Information

Mutant Name	FN427-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN427-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12028437 T-G Hetero INTERGENIC
SBS Chr1 24002182 T-C Hetero INTERGENIC
SBS Chr1 24251546 T-A Hetero INTERGENIC
SBS Chr1 35092992 C-A Homo INTERGENIC
SBS Chr2 25862580 C-A Hetero INTERGENIC
SBS Chr2 25862581 T-C Hetero INTERGENIC
SBS Chr3 19871748 T-A Hetero INTERGENIC
SBS Chr3 23800817 T-G Hetero INTERGENIC
SBS Chr3 28893432 G-A Hetero INTERGENIC
SBS Chr4 14583474 G-A Homo INTERGENIC
SBS Chr4 23769000 G-A Hetero INTERGENIC
SBS Chr4 26411049 T-A Hetero INTERGENIC
SBS Chr4 29592589 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 31033933 G-A Homo INTERGENIC
SBS Chr4 34013873 C-T Hetero INTERGENIC
SBS Chr5 6074063 G-A Homo INTERGENIC
SBS Chr5 6491566 G-A Homo INTERGENIC
SBS Chr5 18931803 C-G Hetero INTRON
SBS Chr5 21184514 A-C Hetero INTRON
SBS Chr5 27320103 T-A Hetero INTRON
SBS Chr5 27320104 A-T Hetero INTRON
SBS Chr6 12623272 G-A Hetero INTRON
SBS Chr6 22188459 G-A Hetero UTR_5_PRIME
SBS Chr6 28747372 A-G Homo UTR_5_PRIME
SBS Chr7 6649154 T-A Hetero INTERGENIC
SBS Chr7 25292795 A-T Hetero INTERGENIC
SBS Chr8 158828 G-A Hetero INTERGENIC
SBS Chr8 5270114 C-T Hetero INTERGENIC
SBS Chr8 9946295 T-C Hetero INTERGENIC
SBS Chr8 21572200 T-C Hetero INTERGENIC
SBS Chr9 1928186 G-A Homo INTERGENIC
SBS Chr9 3079422 C-T Homo STOP_GAINED OsKitaake09g016450
SBS Chr9 6032716 G-T Homo INTERGENIC
SBS Chr9 6032717 A-T Homo INTERGENIC
SBS Chr9 18076629 C-A Homo UTR_5_PRIME
SBS Chr10 2786207 G-C Hetero INTERGENIC
SBS Chr10 5519147 G-C Hetero INTERGENIC
SBS Chr11 7031757 G-A Homo INTRON
SBS Chr11 10238797 A-C Hetero INTERGENIC
SBS Chr12 13349598 G-C Homo INTERGENIC
SBS Chr12 16065355 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 252463 252554 91
Deletion Chr9 266000 266006 6
Deletion Chr7 4763689 4763695 6
Deletion Chr1 5091001 5125000 33999 6
Deletion Chr2 6704358 6704364 6
Deletion Chr7 8464411 8464484 73
Deletion Chr1 11179001 11297000 117999 12
Deletion Chr2 13817172 13817367 195
Deletion Chr12 18814001 18875000 60999 OsKitaake12g138900
Deletion Chr11 27640885 27640995 110
Deletion Chr3 28233488 28233490 2
Deletion Chr6 28747056 28747057 1 OsKitaake06g265500
Deletion Chr6 30246057 30246058 1
Deletion Chr3 34041884 34041885 1
Deletion Chr1 34892001 34899000 6999 OsKitaake01g367700
Deletion Chr1 42044469 42044470 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 5389724 5389727 2
Insertion Chr3 33579077 33579079 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12028437	T-G	Hetero	INTERGENIC
SBS	Chr1	24002182	T-C	Hetero	INTERGENIC
SBS	Chr1	24251546	T-A	Hetero	INTERGENIC
SBS	Chr1	35092992	C-A	Homo	INTERGENIC
SBS	Chr2	25862580	C-A	Hetero	INTERGENIC
SBS	Chr2	25862581	T-C	Hetero	INTERGENIC
SBS	Chr3	19871748	T-A	Hetero	INTERGENIC
SBS	Chr3	23800817	T-G	Hetero	INTERGENIC
SBS	Chr3	28893432	G-A	Hetero	INTERGENIC
SBS	Chr4	14583474	G-A	Homo	INTERGENIC
SBS	Chr4	23769000	G-A	Hetero	INTERGENIC
SBS	Chr4	26411049	T-A	Hetero	INTERGENIC
SBS	Chr4	29592589	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31033933	G-A	Homo	INTERGENIC
SBS	Chr4	34013873	C-T	Hetero	INTERGENIC
SBS	Chr5	6074063	G-A	Homo	INTERGENIC
SBS	Chr5	6491566	G-A	Homo	INTERGENIC
SBS	Chr5	18931803	C-G	Hetero	INTRON
SBS	Chr5	21184514	A-C	Hetero	INTRON
SBS	Chr5	27320103	T-A	Hetero	INTRON
SBS	Chr5	27320104	A-T	Hetero	INTRON
SBS	Chr6	12623272	G-A	Hetero	INTRON
SBS	Chr6	22188459	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	28747372	A-G	Homo	UTR_5_PRIME
SBS	Chr7	6649154	T-A	Hetero	INTERGENIC
SBS	Chr7	25292795	A-T	Hetero	INTERGENIC
SBS	Chr8	158828	G-A	Hetero	INTERGENIC
SBS	Chr8	5270114	C-T	Hetero	INTERGENIC
SBS	Chr8	9946295	T-C	Hetero	INTERGENIC
SBS	Chr8	21572200	T-C	Hetero	INTERGENIC
SBS	Chr9	1928186	G-A	Homo	INTERGENIC
SBS	Chr9	3079422	C-T	Homo	STOP_GAINED	OsKitaake09g016450
SBS	Chr9	6032716	G-T	Homo	INTERGENIC
SBS	Chr9	6032717	A-T	Homo	INTERGENIC
SBS	Chr9	18076629	C-A	Homo	UTR_5_PRIME
SBS	Chr10	2786207	G-C	Hetero	INTERGENIC
SBS	Chr10	5519147	G-C	Hetero	INTERGENIC
SBS	Chr11	7031757	G-A	Homo	INTRON
SBS	Chr11	10238797	A-C	Hetero	INTERGENIC
SBS	Chr12	13349598	G-C	Homo	INTERGENIC
SBS	Chr12	16065355	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	252463	252554	91
Deletion	Chr9	266000	266006	6
Deletion	Chr7	4763689	4763695	6
Deletion	Chr1	5091001	5125000	33999	6
Deletion	Chr2	6704358	6704364	6
Deletion	Chr7	8464411	8464484	73
Deletion	Chr1	11179001	11297000	117999	12
Deletion	Chr2	13817172	13817367	195
Deletion	Chr12	18814001	18875000	60999	OsKitaake12g138900
Deletion	Chr11	27640885	27640995	110
Deletion	Chr3	28233488	28233490	2
Deletion	Chr6	28747056	28747057	1	OsKitaake06g265500
Deletion	Chr6	30246057	30246058	1
Deletion	Chr3	34041884	34041885	1
Deletion	Chr1	34892001	34899000	6999	OsKitaake01g367700
Deletion	Chr1	42044469	42044470	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes