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Mutant Information

Mutant Name	FN4271-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4271-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3159437 C-T Hetero INTERGENIC
SBS Chr1 19341544 T-C Homo INTRON
SBS Chr1 21175670 C-A Hetero INTERGENIC
SBS Chr1 31341267 G-A Homo INTRON
SBS Chr1 32785256 A-G Hetero INTERGENIC
SBS Chr1 38218178 G-A Hetero INTERGENIC
SBS Chr2 2535765 T-A Hetero INTERGENIC
SBS Chr2 2535766 T-A Hetero INTERGENIC
SBS Chr2 10577208 C-A Hetero INTERGENIC
SBS Chr2 25261206 C-T Hetero INTERGENIC
SBS Chr2 25261210 A-G Hetero INTERGENIC
SBS Chr3 201729 C-G Hetero INTERGENIC
SBS Chr3 14293855 G-C Hetero INTERGENIC
SBS Chr3 17617768 T-C Hetero INTERGENIC
SBS Chr3 37288239 T-G Hetero INTRON
SBS Chr4 1481271 C-T Hetero INTERGENIC
SBS Chr4 17195925 C-T Hetero START_GAINED
SBS Chr4 22157469 C-T Hetero INTERGENIC
SBS Chr4 23385899 C-A Hetero INTERGENIC
SBS Chr4 24984130 T-C Hetero INTERGENIC
SBS Chr4 33728984 G-T Hetero INTERGENIC
SBS Chr5 1387451 A-G Hetero INTRON
SBS Chr5 8149337 T-G Hetero INTERGENIC
SBS Chr5 8149644 A-T Hetero INTERGENIC
SBS Chr5 24569638 C-A Hetero INTERGENIC
SBS Chr6 9622616 A-G Hetero INTERGENIC
SBS Chr6 30066061 G-A Hetero SPLICE_SITE_DONOR OsKitaake06g281500
SBS Chr7 5747145 G-A Hetero INTERGENIC
SBS Chr7 12898593 G-T Hetero INTERGENIC
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 13752307 A-G Hetero INTERGENIC
SBS Chr8 23797337 G-T Hetero INTERGENIC
SBS Chr9 14593237 G-T Hetero INTRON
SBS Chr9 20617675 T-C Hetero INTERGENIC
SBS Chr10 2433655 A-T Homo INTERGENIC
SBS Chr10 9910124 G-A Hetero INTERGENIC
SBS Chr10 11375140 G-A Hetero INTERGENIC
SBS Chr10 19919145 T-A Hetero INTERGENIC
SBS Chr10 21882815 G-A Hetero INTERGENIC
SBS Chr11 2171183 A-T Hetero INTERGENIC
SBS Chr11 24013665 T-C Hetero INTRON
SBS Chr12 2888466 C-T Homo INTERGENIC
SBS Chr12 3566785 A-G Hetero INTERGENIC
SBS Chr12 5929375 C-T Hetero INTERGENIC
SBS Chr12 8888976 T-A Hetero INTRON
SBS Chr12 13173443 C-T Homo INTERGENIC
SBS Chr12 13752943 A-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1675417 1675418 1
Deletion Chr7 5260629 5260631 2
Deletion Chr3 5500823 5500865 42
Deletion Chr12 5707421 5707423 2
Deletion Chr6 6176505 6176511 6
Deletion Chr3 7957567 7957581 14
Deletion Chr12 9513984 9513985 1
Deletion Chr12 12307858 12307863 5
Deletion Chr1 20768850 20768852 2
Deletion Chr10 21137001 21152000 14999 OsKitaake10g163900
Deletion Chr1 21941001 22027000 85999 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35509979 35509984 4
Insertion Chr3 15639520 15639523 2
Insertion Chr6 27536936 27536939 2
Insertion Chr11 6420656 6420659 2
Insertion Chr1 9692959 9692961 1
Insertion Chr8 11785930 11785932 1
Insertion Chr9 7561758 7561761 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 9645506 9702890
Inversion Chr6 9645514 9706871
Inversion Chr5 23763953 24372068 OsKitaake05g208500
Inversion Chr5 24372412 24916084

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 7941797 Chr2 35650723 OsKitaake02g375000
Translocation Chr3 7941798 Chr2 35649520
Translocation Chr7 12523203 Chr6 9706864
Translocation Chr7 12523207 Chr6 9702892

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3159437	C-T	Hetero	INTERGENIC
SBS	Chr1	19341544	T-C	Homo	INTRON
SBS	Chr1	21175670	C-A	Hetero	INTERGENIC
SBS	Chr1	31341267	G-A	Homo	INTRON
SBS	Chr1	32785256	A-G	Hetero	INTERGENIC
SBS	Chr1	38218178	G-A	Hetero	INTERGENIC
SBS	Chr2	2535765	T-A	Hetero	INTERGENIC
SBS	Chr2	2535766	T-A	Hetero	INTERGENIC
SBS	Chr2	10577208	C-A	Hetero	INTERGENIC
SBS	Chr2	25261206	C-T	Hetero	INTERGENIC
SBS	Chr2	25261210	A-G	Hetero	INTERGENIC
SBS	Chr3	201729	C-G	Hetero	INTERGENIC
SBS	Chr3	14293855	G-C	Hetero	INTERGENIC
SBS	Chr3	17617768	T-C	Hetero	INTERGENIC
SBS	Chr3	37288239	T-G	Hetero	INTRON
SBS	Chr4	1481271	C-T	Hetero	INTERGENIC
SBS	Chr4	17195925	C-T	Hetero	START_GAINED
SBS	Chr4	22157469	C-T	Hetero	INTERGENIC
SBS	Chr4	23385899	C-A	Hetero	INTERGENIC
SBS	Chr4	24984130	T-C	Hetero	INTERGENIC
SBS	Chr4	33728984	G-T	Hetero	INTERGENIC
SBS	Chr5	1387451	A-G	Hetero	INTRON
SBS	Chr5	8149337	T-G	Hetero	INTERGENIC
SBS	Chr5	8149644	A-T	Hetero	INTERGENIC
SBS	Chr5	24569638	C-A	Hetero	INTERGENIC
SBS	Chr6	9622616	A-G	Hetero	INTERGENIC
SBS	Chr6	30066061	G-A	Hetero	SPLICE_SITE_DONOR	OsKitaake06g281500
SBS	Chr7	5747145	G-A	Hetero	INTERGENIC
SBS	Chr7	12898593	G-T	Hetero	INTERGENIC
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	13752307	A-G	Hetero	INTERGENIC
SBS	Chr8	23797337	G-T	Hetero	INTERGENIC
SBS	Chr9	14593237	G-T	Hetero	INTRON
SBS	Chr9	20617675	T-C	Hetero	INTERGENIC
SBS	Chr10	2433655	A-T	Homo	INTERGENIC
SBS	Chr10	9910124	G-A	Hetero	INTERGENIC
SBS	Chr10	11375140	G-A	Hetero	INTERGENIC
SBS	Chr10	19919145	T-A	Hetero	INTERGENIC
SBS	Chr10	21882815	G-A	Hetero	INTERGENIC
SBS	Chr11	2171183	A-T	Hetero	INTERGENIC
SBS	Chr11	24013665	T-C	Hetero	INTRON
SBS	Chr12	2888466	C-T	Homo	INTERGENIC
SBS	Chr12	3566785	A-G	Hetero	INTERGENIC
SBS	Chr12	5929375	C-T	Hetero	INTERGENIC
SBS	Chr12	8888976	T-A	Hetero	INTRON
SBS	Chr12	13173443	C-T	Homo	INTERGENIC
SBS	Chr12	13752943	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1675417	1675418	1
Deletion	Chr7	5260629	5260631	2
Deletion	Chr3	5500823	5500865	42
Deletion	Chr12	5707421	5707423	2
Deletion	Chr6	6176505	6176511	6
Deletion	Chr3	7957567	7957581	14
Deletion	Chr12	9513984	9513985	1
Deletion	Chr12	12307858	12307863	5
Deletion	Chr1	20768850	20768852	2
Deletion	Chr10	21137001	21152000	14999	OsKitaake10g163900
Deletion	Chr1	21941001	22027000	85999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9645506	9702890
Inversion	Chr6	9645514	9706871
Inversion	Chr5	23763953	24372068	OsKitaake05g208500
Inversion	Chr5	24372412	24916084

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes