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| Mutant Information |
|---|
| Mutant Name | FN4275-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4275-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 21084344 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34066864 | A-C | Hetero | INTRON | |
| SBS | Chr1 | 37739082 | A-G | Hetero | STOP_LOST | OsKitaake01g402900 |
| SBS | Chr2 | 5828422 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g080200 |
| SBS | Chr2 | 11924428 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 24467400 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16546623 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 31485630 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 32536288 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 33644885 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12384729 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 16506925 | C-G | Hetero | INTRON | |
| SBS | Chr4 | 31721174 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 686674 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 8086661 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 10320359 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8441152 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 18063404 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 19040307 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 9504748 | C-A | Hetero | INTRON | |
| SBS | Chr9 | 9504751 | C-A | Hetero | INTRON | |
| SBS | Chr10 | 16628197 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 14440781 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 16123714 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 1005070 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g015100 |
| SBS | Chr12 | 1981510 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10314763 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 81589 | 81943 | 354 | |
| Deletion | Chr12 | 1340001 | 1461000 | 120999 | 23 |
| Deletion | Chr12 | 1658930 | 1658942 | 12 | OsKitaake12g025100 |
| Deletion | Chr12 | 3663436 | 3663445 | 9 | |
| Deletion | Chr7 | 4380424 | 4380428 | 4 | |
| Deletion | Chr7 | 5585976 | 5585978 | 2 | |
| Deletion | Chr1 | 9948228 | 9948247 | 19 | |
| Deletion | Chr11 | 18052729 | 18052731 | 2 | |
| Deletion | Chr11 | 20291272 | 20291274 | 2 | |
| Deletion | Chr2 | 27764439 | 27764441 | 2 | |
| Deletion | Chr2 | 29838891 | 29838893 | 2 | |
| Deletion | Chr4 | 32596023 | 32596032 | 9 | |
| Deletion | Chr1 | 32915039 | 32915045 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 11926131 | 11926139 | 7 | |
| Insertion | Chr10 | 14863209 | 14863211 | 1 | |
| Insertion | Chr10 | 3567668 | 3567670 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 6743897 | 7627834 | OsKitaake01g095900 |
| Inversion | Chr1 | 6743902 | 7627840 | OsKitaake01g095900 |
| Inversion | Chr1 | 17221719 | 17287590 | |
| Inversion | Chr3 | 35785552 | 36446439 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 19563281 | Chr4 | 27575160 | OsKitaake04g202200 |
| Translocation | Chr6 | 19563722 | Chr4 | 27575180 | OsKitaake04g202200 |
| Translocation | Chr4 | 28529545 | Chr3 | 36446443 | 2 |
| Translocation | Chr4 | 28535571 | Chr3 | 35785558 | OsKitaake03g393900 |