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Mutant Information

Mutant Name	FN4279-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4279-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13602676 G-A Homo INTRON
SBS Chr1 13602677 G-A Homo INTRON
SBS Chr1 14262458 C-T Homo INTERGENIC
SBS Chr1 24220160 G-A Homo INTRON
SBS Chr3 6679633 G-A Homo INTERGENIC
SBS Chr3 10697821 C-T Homo UTR_3_PRIME
SBS Chr4 1562032 G-A Hetero UTR_3_PRIME
SBS Chr4 4173152 C-T Homo INTERGENIC
SBS Chr4 4173157 G-T Homo INTERGENIC
SBS Chr4 4173158 A-T Homo INTERGENIC
SBS Chr4 4959311 G-A Hetero INTRON
SBS Chr4 15090559 T-G Homo INTERGENIC
SBS Chr4 16211442 G-T Homo INTERGENIC
SBS Chr5 14068678 C-A Hetero INTERGENIC
SBS Chr5 18782075 A-T Hetero INTRON
SBS Chr5 18782076 A-T Hetero INTRON
SBS Chr6 6283925 C-T Hetero INTERGENIC
SBS Chr6 13227282 A-C Homo INTERGENIC
SBS Chr6 17381038 C-A Homo INTERGENIC
SBS Chr6 30065994 G-C Homo NON_SYNONYMOUS_CODING OsKitaake06g281500
SBS Chr7 10432303 A-G Hetero INTRON
SBS Chr7 11505248 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g107100
SBS Chr7 18816596 A-G Hetero INTERGENIC
SBS Chr8 8888918 T-C Homo INTERGENIC
SBS Chr8 26664452 G-A Homo INTERGENIC
SBS Chr8 26998562 A-T Homo INTRON
SBS Chr9 8922190 G-T Homo INTERGENIC
SBS Chr9 22361509 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 14230461 T-C Homo INTERGENIC
SBS Chr11 6224492 A-G Hetero INTERGENIC
SBS Chr11 17890342 T-C Hetero INTERGENIC
SBS Chr12 3344402 G-A Homo INTERGENIC
SBS Chr12 6938321 G-A Homo INTERGENIC
SBS Chr12 15018124 C-G Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1399001 1437000 37999 5
Deletion Chr12 2754056 2754069 13 OsKitaake12g041000
Deletion Chr5 3226227 3226234 7
Deletion Chr4 4172118 4172122 4
Deletion Chr4 4250512 4250518 6
Deletion Chr4 8124594 8124598 4
Deletion Chr2 8809765 8809786 21
Deletion Chr2 9073933 9073943 10
Deletion Chr1 11569861 11570023 162
Deletion Chr8 12845098 12845099 1
Deletion Chr1 13365642 13365650 8
Deletion Chr1 13406001 13415000 8999
Deletion Chr4 16577663 16577666 3
Deletion Chr8 18543123 18543124 1
Deletion Chr8 20353422 20353443 21
Deletion Chr6 20842015 20842020 5
Deletion Chr5 27225582 27225596 14
Deletion Chr1 27523870 27523878 8
Deletion Chr4 34545971 34545973 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18641766 18917118 OsKitaake05g145700
Inversion Chr5 18641789 18920667 2
Inversion Chr4 22852232 23119417

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 8449996 Chr2 18437884
Translocation Chr8 8450187 Chr2 18437874

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13602676	G-A	Homo	INTRON
SBS	Chr1	13602677	G-A	Homo	INTRON
SBS	Chr1	14262458	C-T	Homo	INTERGENIC
SBS	Chr1	24220160	G-A	Homo	INTRON
SBS	Chr3	6679633	G-A	Homo	INTERGENIC
SBS	Chr3	10697821	C-T	Homo	UTR_3_PRIME
SBS	Chr4	1562032	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	4173152	C-T	Homo	INTERGENIC
SBS	Chr4	4173157	G-T	Homo	INTERGENIC
SBS	Chr4	4173158	A-T	Homo	INTERGENIC
SBS	Chr4	4959311	G-A	Hetero	INTRON
SBS	Chr4	15090559	T-G	Homo	INTERGENIC
SBS	Chr4	16211442	G-T	Homo	INTERGENIC
SBS	Chr5	14068678	C-A	Hetero	INTERGENIC
SBS	Chr5	18782075	A-T	Hetero	INTRON
SBS	Chr5	18782076	A-T	Hetero	INTRON
SBS	Chr6	6283925	C-T	Hetero	INTERGENIC
SBS	Chr6	13227282	A-C	Homo	INTERGENIC
SBS	Chr6	17381038	C-A	Homo	INTERGENIC
SBS	Chr6	30065994	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g281500
SBS	Chr7	10432303	A-G	Hetero	INTRON
SBS	Chr7	11505248	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g107100
SBS	Chr7	18816596	A-G	Hetero	INTERGENIC
SBS	Chr8	8888918	T-C	Homo	INTERGENIC
SBS	Chr8	26664452	G-A	Homo	INTERGENIC
SBS	Chr8	26998562	A-T	Homo	INTRON
SBS	Chr9	8922190	G-T	Homo	INTERGENIC
SBS	Chr9	22361509	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	14230461	T-C	Homo	INTERGENIC
SBS	Chr11	6224492	A-G	Hetero	INTERGENIC
SBS	Chr11	17890342	T-C	Hetero	INTERGENIC
SBS	Chr12	3344402	G-A	Homo	INTERGENIC
SBS	Chr12	6938321	G-A	Homo	INTERGENIC
SBS	Chr12	15018124	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1399001	1437000	37999	5
Deletion	Chr12	2754056	2754069	13	OsKitaake12g041000
Deletion	Chr5	3226227	3226234	7
Deletion	Chr4	4172118	4172122	4
Deletion	Chr4	4250512	4250518	6
Deletion	Chr4	8124594	8124598	4
Deletion	Chr2	8809765	8809786	21
Deletion	Chr2	9073933	9073943	10
Deletion	Chr1	11569861	11570023	162
Deletion	Chr8	12845098	12845099	1
Deletion	Chr1	13365642	13365650	8
Deletion	Chr1	13406001	13415000	8999
Deletion	Chr4	16577663	16577666	3
Deletion	Chr8	18543123	18543124	1
Deletion	Chr8	20353422	20353443	21
Deletion	Chr6	20842015	20842020	5
Deletion	Chr5	27225582	27225596	14
Deletion	Chr1	27523870	27523878	8
Deletion	Chr4	34545971	34545973	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18641766	18917118	OsKitaake05g145700
Inversion	Chr5	18641789	18920667	2
Inversion	Chr4	22852232	23119417

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes