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Mutant Information

Mutant Name	FN428-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN428-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13568930 T-A Hetero INTERGENIC
SBS Chr1 24158266 C-T Hetero INTERGENIC
SBS Chr2 6725516 G-T Hetero UTR_3_PRIME
SBS Chr2 6725525 C-G Hetero UTR_3_PRIME
SBS Chr2 9984773 T-A Hetero INTRON
SBS Chr2 19887189 C-G Homo INTERGENIC
SBS Chr2 25123270 A-T Hetero INTERGENIC
SBS Chr3 11990912 A-G Hetero INTERGENIC
SBS Chr3 15265999 C-A Hetero INTERGENIC
SBS Chr3 16022345 C-G Hetero INTERGENIC
SBS Chr4 25886920 T-A Hetero INTERGENIC
SBS Chr4 27404415 A-C Hetero INTERGENIC
SBS Chr4 34645673 A-G Hetero INTRON
SBS Chr4 36589299 T-A Hetero INTERGENIC
SBS Chr5 12444628 A-G Hetero INTERGENIC
SBS Chr6 1062148 G-C Homo INTERGENIC
SBS Chr6 11220810 C-T Hetero INTERGENIC
SBS Chr6 30790068 A-G Hetero INTERGENIC
SBS Chr7 6358263 A-T Homo INTERGENIC
SBS Chr7 19630749 G-A Hetero INTERGENIC
SBS Chr7 23187896 C-A Homo INTERGENIC
SBS Chr7 26132536 A-T Hetero INTRON
SBS Chr8 1412884 G-A Homo INTERGENIC
SBS Chr8 14391009 C-T Hetero INTERGENIC
SBS Chr9 2560765 G-A Hetero INTERGENIC
SBS Chr9 8651683 T-C Hetero INTERGENIC
SBS Chr9 8651690 C-T Hetero INTERGENIC
SBS Chr9 15826609 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g112850
SBS Chr9 16329689 A-T Hetero SYNONYMOUS_CODING
SBS Chr10 2123498 G-T Hetero START_GAINED
SBS Chr10 6033236 A-G Hetero INTERGENIC
SBS Chr10 12528327 C-T Hetero INTERGENIC
SBS Chr10 15356143 C-G Hetero INTERGENIC
SBS Chr11 4879672 G-C Homo SYNONYMOUS_CODING
SBS Chr11 10708240 C-T Hetero INTERGENIC
SBS Chr11 14849515 A-T Hetero INTERGENIC
SBS Chr11 16281704 A-C Hetero INTERGENIC
SBS Chr11 21303410 C-G Homo INTERGENIC
SBS Chr12 13862221 T-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 446429 446435 6
Deletion Chr1 991001 1011000 19999 4
Deletion Chr8 1128056 1128060 4
Deletion Chr6 1227313 1227315 2
Deletion Chr12 6471229 6471230 1
Deletion Chr9 6964846 6964851 5
Deletion Chr4 11774546 11774555 9 OsKitaake04g057100
Deletion Chr12 12375894 12375895 1
Deletion Chr9 16250425 16250426 1
Deletion Chr9 17380515 17380522 7
Deletion Chr5 17516960 17516961 1
Deletion Chr7 18756649 18756651 2
Deletion Chr9 19364069 19364083 14
Deletion Chr5 23330583 23330584 1
Deletion Chr7 23363919 23363928 9
Deletion Chr8 23846023 23846027 4
Deletion Chr3 25081661 25081663 2
Deletion Chr3 25238022 25238024 2
Deletion Chr11 28958201 28958202 1
Deletion Chr3 33928978 33928986 8
Deletion Chr2 34010687 34010696 9 OsKitaake02g353300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 17824538 17824541 2
Insertion Chr1 6413509 6413512 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 5956424 6844959
Inversion Chr2 6290175 6844883 OsKitaake02g085100
Inversion Chr2 6936436 7112365 OsKitaake02g095400
Inversion Chr2 6936449 7112361 OsKitaake02g095400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8650581 Chr3 5954027 OsKitaake03g085100
Translocation Chr9 18828963 Chr8 22430171
Translocation Chr9 18829697 Chr8 22429962

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13568930	T-A	Hetero	INTERGENIC
SBS	Chr1	24158266	C-T	Hetero	INTERGENIC
SBS	Chr2	6725516	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	6725525	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	9984773	T-A	Hetero	INTRON
SBS	Chr2	19887189	C-G	Homo	INTERGENIC
SBS	Chr2	25123270	A-T	Hetero	INTERGENIC
SBS	Chr3	11990912	A-G	Hetero	INTERGENIC
SBS	Chr3	15265999	C-A	Hetero	INTERGENIC
SBS	Chr3	16022345	C-G	Hetero	INTERGENIC
SBS	Chr4	25886920	T-A	Hetero	INTERGENIC
SBS	Chr4	27404415	A-C	Hetero	INTERGENIC
SBS	Chr4	34645673	A-G	Hetero	INTRON
SBS	Chr4	36589299	T-A	Hetero	INTERGENIC
SBS	Chr5	12444628	A-G	Hetero	INTERGENIC
SBS	Chr6	1062148	G-C	Homo	INTERGENIC
SBS	Chr6	11220810	C-T	Hetero	INTERGENIC
SBS	Chr6	30790068	A-G	Hetero	INTERGENIC
SBS	Chr7	6358263	A-T	Homo	INTERGENIC
SBS	Chr7	19630749	G-A	Hetero	INTERGENIC
SBS	Chr7	23187896	C-A	Homo	INTERGENIC
SBS	Chr7	26132536	A-T	Hetero	INTRON
SBS	Chr8	1412884	G-A	Homo	INTERGENIC
SBS	Chr8	14391009	C-T	Hetero	INTERGENIC
SBS	Chr9	2560765	G-A	Hetero	INTERGENIC
SBS	Chr9	8651683	T-C	Hetero	INTERGENIC
SBS	Chr9	8651690	C-T	Hetero	INTERGENIC
SBS	Chr9	15826609	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g112850
SBS	Chr9	16329689	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	2123498	G-T	Hetero	START_GAINED
SBS	Chr10	6033236	A-G	Hetero	INTERGENIC
SBS	Chr10	12528327	C-T	Hetero	INTERGENIC
SBS	Chr10	15356143	C-G	Hetero	INTERGENIC
SBS	Chr11	4879672	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr11	10708240	C-T	Hetero	INTERGENIC
SBS	Chr11	14849515	A-T	Hetero	INTERGENIC
SBS	Chr11	16281704	A-C	Hetero	INTERGENIC
SBS	Chr11	21303410	C-G	Homo	INTERGENIC
SBS	Chr12	13862221	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	446429	446435	6
Deletion	Chr1	991001	1011000	19999	4
Deletion	Chr8	1128056	1128060	4
Deletion	Chr6	1227313	1227315	2
Deletion	Chr12	6471229	6471230	1
Deletion	Chr9	6964846	6964851	5
Deletion	Chr4	11774546	11774555	9	OsKitaake04g057100
Deletion	Chr12	12375894	12375895	1
Deletion	Chr9	16250425	16250426	1
Deletion	Chr9	17380515	17380522	7
Deletion	Chr5	17516960	17516961	1
Deletion	Chr7	18756649	18756651	2
Deletion	Chr9	19364069	19364083	14
Deletion	Chr5	23330583	23330584	1
Deletion	Chr7	23363919	23363928	9
Deletion	Chr8	23846023	23846027	4
Deletion	Chr3	25081661	25081663	2
Deletion	Chr3	25238022	25238024	2
Deletion	Chr11	28958201	28958202	1
Deletion	Chr3	33928978	33928986	8
Deletion	Chr2	34010687	34010696	9	OsKitaake02g353300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5956424	6844959
Inversion	Chr2	6290175	6844883	OsKitaake02g085100
Inversion	Chr2	6936436	7112365	OsKitaake02g095400
Inversion	Chr2	6936449	7112361	OsKitaake02g095400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes