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Mutant Information

Mutant Name	FN429-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN429-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2666984 G-A Homo INTERGENIC
SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 40379796 C-A Hetero INTERGENIC
SBS Chr2 20138171 G-A Hetero INTERGENIC
SBS Chr2 24120536 T-A Homo INTERGENIC
SBS Chr2 29997897 T-A Hetero INTERGENIC
SBS Chr2 33276030 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g342600
SBS Chr3 32583 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 22277565 T-C Hetero INTERGENIC
SBS Chr3 31862770 G-C Homo UTR_3_PRIME
SBS Chr4 1927346 C-T Hetero INTERGENIC
SBS Chr4 5061731 G-A Homo INTERGENIC
SBS Chr4 18192328 C-T Hetero INTERGENIC
SBS Chr5 5617781 G-C Hetero SYNONYMOUS_CODING
SBS Chr5 17212796 C-T Hetero INTERGENIC
SBS Chr5 22221420 T-G Homo INTERGENIC
SBS Chr5 28863119 A-T Homo INTERGENIC
SBS Chr5 30254163 C-T Homo INTERGENIC
SBS Chr6 9807361 A-C Hetero INTERGENIC
SBS Chr6 14099411 T-C Homo INTERGENIC
SBS Chr6 15133696 C-T Homo INTERGENIC
SBS Chr7 13757118 C-T Hetero INTERGENIC
SBS Chr7 28231903 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g266800
SBS Chr7 29232012 A-G Hetero SPLICE_SITE_REGION
SBS Chr8 2527256 T-A Hetero INTERGENIC
SBS Chr8 11284013 T-C Homo INTERGENIC
SBS Chr8 16397062 G-T Homo INTERGENIC
SBS Chr8 16397065 A-G Homo INTERGENIC
SBS Chr9 6415777 C-T Hetero INTERGENIC
SBS Chr9 11695646 A-G Hetero INTERGENIC
SBS Chr9 12562400 T-C Hetero INTERGENIC
SBS Chr10 8312795 A-G Hetero INTERGENIC
SBS Chr10 22616359 G-A Homo INTERGENIC
SBS Chr11 19118706 G-A Hetero INTERGENIC
SBS Chr11 21666984 C-T Hetero INTERGENIC
SBS Chr11 22446720 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g178301
SBS Chr11 24451084 G-A Hetero INTERGENIC
SBS Chr12 5031819 C-T Hetero INTERGENIC
SBS Chr12 12296143 T-G Hetero INTERGENIC
SBS Chr12 12739709 G-T Hetero INTERGENIC
SBS Chr12 13953560 T-A Hetero INTERGENIC
SBS Chr12 17211184 C-T Homo INTERGENIC
SBS Chr12 22455075 A-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1515915 1515919 4 OsKitaake08g018800
Deletion Chr3 4030919 4030921 2
Deletion Chr4 4318884 4318885 1
Deletion Chr4 6055546 6055547 1
Deletion Chr10 9983862 9983863 1
Deletion Chr1 12090277 12090290 13 OsKitaake01g147800
Deletion Chr11 12967287 12967291 4
Deletion Chr3 15562729 15562739 10
Deletion Chr8 16393758 16393759 1
Deletion Chr4 17397835 17397841 6 OsKitaake04g085800
Deletion Chr2 19227997 19228009 12
Deletion Chr1 22735944 22735949 5 OsKitaake01g217300
Deletion Chr3 23499372 23499379 7
Deletion Chr6 24186284 24186294 10
Deletion Chr8 26020626 26020632 6
Deletion Chr6 27296654 27296661 7
Deletion Chr3 32629167 32629180 13 OsKitaake03g345400
Deletion Chr2 33411098 33411103 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38891905 38891908 2
Insertion Chr2 16193663 16193666 2
Insertion Chr12 10387922 10387927 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 14809139 14809382
Inversion Chr7 24779668 24962574
Inversion Chr7 24779674 24962588
Inversion Chr1 38326763 38326866 OsKitaake01g408700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2666984	G-A	Homo	INTERGENIC
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	40379796	C-A	Hetero	INTERGENIC
SBS	Chr2	20138171	G-A	Hetero	INTERGENIC
SBS	Chr2	24120536	T-A	Homo	INTERGENIC
SBS	Chr2	29997897	T-A	Hetero	INTERGENIC
SBS	Chr2	33276030	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g342600
SBS	Chr3	32583	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	22277565	T-C	Hetero	INTERGENIC
SBS	Chr3	31862770	G-C	Homo	UTR_3_PRIME
SBS	Chr4	1927346	C-T	Hetero	INTERGENIC
SBS	Chr4	5061731	G-A	Homo	INTERGENIC
SBS	Chr4	18192328	C-T	Hetero	INTERGENIC
SBS	Chr5	5617781	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	17212796	C-T	Hetero	INTERGENIC
SBS	Chr5	22221420	T-G	Homo	INTERGENIC
SBS	Chr5	28863119	A-T	Homo	INTERGENIC
SBS	Chr5	30254163	C-T	Homo	INTERGENIC
SBS	Chr6	9807361	A-C	Hetero	INTERGENIC
SBS	Chr6	14099411	T-C	Homo	INTERGENIC
SBS	Chr6	15133696	C-T	Homo	INTERGENIC
SBS	Chr7	13757118	C-T	Hetero	INTERGENIC
SBS	Chr7	28231903	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g266800
SBS	Chr7	29232012	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr8	2527256	T-A	Hetero	INTERGENIC
SBS	Chr8	11284013	T-C	Homo	INTERGENIC
SBS	Chr8	16397062	G-T	Homo	INTERGENIC
SBS	Chr8	16397065	A-G	Homo	INTERGENIC
SBS	Chr9	6415777	C-T	Hetero	INTERGENIC
SBS	Chr9	11695646	A-G	Hetero	INTERGENIC
SBS	Chr9	12562400	T-C	Hetero	INTERGENIC
SBS	Chr10	8312795	A-G	Hetero	INTERGENIC
SBS	Chr10	22616359	G-A	Homo	INTERGENIC
SBS	Chr11	19118706	G-A	Hetero	INTERGENIC
SBS	Chr11	21666984	C-T	Hetero	INTERGENIC
SBS	Chr11	22446720	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g178301
SBS	Chr11	24451084	G-A	Hetero	INTERGENIC
SBS	Chr12	5031819	C-T	Hetero	INTERGENIC
SBS	Chr12	12296143	T-G	Hetero	INTERGENIC
SBS	Chr12	12739709	G-T	Hetero	INTERGENIC
SBS	Chr12	13953560	T-A	Hetero	INTERGENIC
SBS	Chr12	17211184	C-T	Homo	INTERGENIC
SBS	Chr12	22455075	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1515915	1515919	4	OsKitaake08g018800
Deletion	Chr3	4030919	4030921	2
Deletion	Chr4	4318884	4318885	1
Deletion	Chr4	6055546	6055547	1
Deletion	Chr10	9983862	9983863	1
Deletion	Chr1	12090277	12090290	13	OsKitaake01g147800
Deletion	Chr11	12967287	12967291	4
Deletion	Chr3	15562729	15562739	10
Deletion	Chr8	16393758	16393759	1
Deletion	Chr4	17397835	17397841	6	OsKitaake04g085800
Deletion	Chr2	19227997	19228009	12
Deletion	Chr1	22735944	22735949	5	OsKitaake01g217300
Deletion	Chr3	23499372	23499379	7
Deletion	Chr6	24186284	24186294	10
Deletion	Chr8	26020626	26020632	6
Deletion	Chr6	27296654	27296661	7
Deletion	Chr3	32629167	32629180	13	OsKitaake03g345400
Deletion	Chr2	33411098	33411103	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14809139	14809382
Inversion	Chr7	24779668	24962574
Inversion	Chr7	24779674	24962588
Inversion	Chr1	38326763	38326866	OsKitaake01g408700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes