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Mutant Information

Mutant Name	FN430-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN430-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22464661 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g214600
SBS Chr1 32041106 A-G Hetero INTERGENIC
SBS Chr2 14101362 A-G Homo INTRON
SBS Chr2 14101363 G-A Homo INTRON
SBS Chr2 15598233 T-C Homo INTERGENIC
SBS Chr2 15840791 C-T Homo INTERGENIC
SBS Chr2 16653364 T-A Homo INTERGENIC
SBS Chr2 34146537 C-T Hetero INTRON
SBS Chr2 34660414 A-C Hetero SYNONYMOUS_CODING
SBS Chr4 13939195 C-A Homo INTERGENIC
SBS Chr4 27805848 C-T Homo INTERGENIC
SBS Chr5 11598333 C-T Hetero INTERGENIC
SBS Chr5 21074216 G-A Hetero INTERGENIC
SBS Chr5 24536586 G-A Homo INTERGENIC
SBS Chr5 26933571 G-A Hetero INTERGENIC
SBS Chr6 14611736 C-T Homo INTERGENIC
SBS Chr6 27834780 T-A Hetero INTERGENIC
SBS Chr7 25483428 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g231100
SBS Chr8 11732936 T-G Hetero INTERGENIC
SBS Chr8 14119459 C-T Hetero INTERGENIC
SBS Chr8 26100402 G-T Hetero INTERGENIC
SBS Chr8 26352913 T-C Hetero INTRON
SBS Chr9 7207100 C-T Hetero INTERGENIC
SBS Chr9 11294223 C-G Hetero INTERGENIC
SBS Chr10 105607 G-C Hetero INTERGENIC
SBS Chr10 2494417 G-A Homo INTERGENIC
SBS Chr10 17224163 C-T Hetero INTERGENIC
SBS Chr10 22257485 T-C Hetero INTRON
SBS Chr11 26276018 C-T Homo INTERGENIC
SBS Chr11 26276019 G-A Homo INTERGENIC
SBS Chr11 27048789 G-T Homo STOP_GAINED OsKitaake11g220500
SBS Chr12 6469540 C-T Hetero INTERGENIC
SBS Chr12 10163926 G-A Hetero INTERGENIC
SBS Chr12 10163931 G-C Hetero INTERGENIC
SBS Chr12 11809867 G-A Hetero INTERGENIC
SBS Chr12 11809868 G-A Hetero INTERGENIC
SBS Chr12 24308140 C-T Hetero INTERGENIC
SBS Chr12 24512271 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4010419 4010436 17
Deletion Chr10 10338590 10338712 122
Deletion Chr5 10928001 10937000 8999
Deletion Chr4 11526245 11526246 1
Deletion Chr6 13172001 13183000 10999
Deletion Chr11 17673001 17708000 34999 4
Deletion Chr8 20756341 20756342 1
Deletion Chr1 21053001 21151000 97999 8
Deletion Chr3 22570120 22570121 1 OsKitaake03g244800
Deletion Chr1 22777803 22777804 1
Deletion Chr11 25935243 25935255 12
Deletion Chr11 26345351 26345352 1
Deletion Chr1 28910592 28910593 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 741050 741053 2
Insertion Chr4 29716800 29716804 3
Insertion Chr7 14688816 14688819 2
Insertion Chr12 8478910 8478913 2
Insertion Chr1 9692959 9692961 1
Insertion Chr4 10335753 10335755 1
Insertion Chr6 15742549 15742552 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8590652 Chr1 17250321
Translocation Chr11 13291750 Chr8 28968878

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22464661	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g214600
SBS	Chr1	32041106	A-G	Hetero	INTERGENIC
SBS	Chr2	14101362	A-G	Homo	INTRON
SBS	Chr2	14101363	G-A	Homo	INTRON
SBS	Chr2	15598233	T-C	Homo	INTERGENIC
SBS	Chr2	15840791	C-T	Homo	INTERGENIC
SBS	Chr2	16653364	T-A	Homo	INTERGENIC
SBS	Chr2	34146537	C-T	Hetero	INTRON
SBS	Chr2	34660414	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	13939195	C-A	Homo	INTERGENIC
SBS	Chr4	27805848	C-T	Homo	INTERGENIC
SBS	Chr5	11598333	C-T	Hetero	INTERGENIC
SBS	Chr5	21074216	G-A	Hetero	INTERGENIC
SBS	Chr5	24536586	G-A	Homo	INTERGENIC
SBS	Chr5	26933571	G-A	Hetero	INTERGENIC
SBS	Chr6	14611736	C-T	Homo	INTERGENIC
SBS	Chr6	27834780	T-A	Hetero	INTERGENIC
SBS	Chr7	25483428	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g231100
SBS	Chr8	11732936	T-G	Hetero	INTERGENIC
SBS	Chr8	14119459	C-T	Hetero	INTERGENIC
SBS	Chr8	26100402	G-T	Hetero	INTERGENIC
SBS	Chr8	26352913	T-C	Hetero	INTRON
SBS	Chr9	7207100	C-T	Hetero	INTERGENIC
SBS	Chr9	11294223	C-G	Hetero	INTERGENIC
SBS	Chr10	105607	G-C	Hetero	INTERGENIC
SBS	Chr10	2494417	G-A	Homo	INTERGENIC
SBS	Chr10	17224163	C-T	Hetero	INTERGENIC
SBS	Chr10	22257485	T-C	Hetero	INTRON
SBS	Chr11	26276018	C-T	Homo	INTERGENIC
SBS	Chr11	26276019	G-A	Homo	INTERGENIC
SBS	Chr11	27048789	G-T	Homo	STOP_GAINED	OsKitaake11g220500
SBS	Chr12	6469540	C-T	Hetero	INTERGENIC
SBS	Chr12	10163926	G-A	Hetero	INTERGENIC
SBS	Chr12	10163931	G-C	Hetero	INTERGENIC
SBS	Chr12	11809867	G-A	Hetero	INTERGENIC
SBS	Chr12	11809868	G-A	Hetero	INTERGENIC
SBS	Chr12	24308140	C-T	Hetero	INTERGENIC
SBS	Chr12	24512271	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4010419	4010436	17
Deletion	Chr10	10338590	10338712	122
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr4	11526245	11526246	1
Deletion	Chr6	13172001	13183000	10999
Deletion	Chr11	17673001	17708000	34999	4
Deletion	Chr8	20756341	20756342	1
Deletion	Chr1	21053001	21151000	97999	8
Deletion	Chr3	22570120	22570121	1	OsKitaake03g244800
Deletion	Chr1	22777803	22777804	1
Deletion	Chr11	25935243	25935255	12
Deletion	Chr11	26345351	26345352	1
Deletion	Chr1	28910592	28910593	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8590652	Chr1	17250321
Translocation	Chr11	13291750	Chr8	28968878

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes