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| Mutant Information |
|---|
| Mutant Name | FN4300-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4300-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18250038 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27751224 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 39253225 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 39253226 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 39570163 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6050163 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g082700 |
| SBS | Chr2 | 22291988 | T-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 22595821 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7801108 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1467441 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3030845 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16843053 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 6816927 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 5992090 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9546638 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16493921 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 18235176 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24153357 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2282919 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 24583829 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 4524987 | A-G | Homo | INTRON | |
| SBS | Chr8 | 6646741 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9865058 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 22404361 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 1514125 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 18303358 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 19922075 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 6564688 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12709957 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 20490132 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 29346234 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3166707 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 7606041 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11399975 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 16363224 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16363225 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 715973 | 715974 | 1 | |
| Deletion | Chr8 | 4551229 | 4551230 | 1 | |
| Deletion | Chr12 | 5364916 | 5364917 | 1 | |
| Deletion | Chr11 | 6219874 | 6219883 | 9 | |
| Deletion | Chr2 | 12884503 | 12884504 | 1 | |
| Deletion | Chr9 | 15860872 | 15860873 | 1 | |
| Deletion | Chr4 | 16989001 | 17019000 | 29999 | OsKitaake04g083200 |
| Deletion | Chr4 | 20960449 | 20960460 | 11 | |
| Deletion | Chr12 | 23939000 | 23939005 | 5 | |
| Deletion | Chr4 | 25635295 | 25635302 | 7 | OsKitaake04g177800 |
| Deletion | Chr3 | 28689680 | 28689682 | 2 | |
| Deletion | Chr4 | 29760651 | 29760674 | 23 | |
| Deletion | Chr2 | 33474745 | 33474761 | 16 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 6209644 | 6209647 | 2 | |
| Insertion | Chr8 | 3080123 | 3080126 | 2 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 5650086 | 5905994 | |
| Inversion | Chr4 | 16438528 | 16968938 | |
| Inversion | Chr4 | 16438535 | 16968945 | |
| Inversion | Chr4 | 16485963 | 17054248 | OsKitaake04g080300 |
| Inversion | Chr4 | 16485969 | 17016241 | OsKitaake04g080300 |
| Inversion | Chr4 | 30059585 | 30090475 | |
| Inversion | Chr4 | 30059588 | 30090403 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 5224616 | Chr1 | 5875023 | 2 |
| Translocation | Chr4 | 5226731 | Chr1 | 5650050 | OsKitaake04g025400 |
| Translocation | Chr3 | 13309779 | Chr1 | 5905995 | |
| Translocation | Chr3 | 13309782 | Chr1 | 5875034 | OsKitaake01g074900 |
| Translocation | Chr5 | 29295186 | Chr1 | 18732931 | OsKitaake05g278000 |
| Translocation | Chr5 | 29297309 | Chr1 | 18732926 |