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Mutant Information

Mutant Name	FN4302-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4302-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 1641469 C-A Hetero INTRON
SBS Chr2 3276687 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g047600
SBS Chr2 3992414 A-T Hetero INTERGENIC
SBS Chr2 23209053 T-A Homo INTERGENIC
SBS Chr2 23377542 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g228900
SBS Chr3 8697859 C-T Hetero INTRON
SBS Chr3 24789985 A-C Hetero INTERGENIC
SBS Chr5 6107066 T-C Hetero INTERGENIC
SBS Chr5 6207140 C-T Hetero INTERGENIC
SBS Chr5 12126354 T-A Hetero INTERGENIC
SBS Chr6 12122768 G-A Homo INTERGENIC
SBS Chr6 15847137 A-T Homo INTERGENIC
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr7 1727115 G-A Hetero INTERGENIC
SBS Chr8 3671523 T-C Homo INTERGENIC
SBS Chr8 15722842 C-T Homo INTERGENIC
SBS Chr9 14194714 T-A Homo INTRON
SBS Chr10 4756055 C-A Hetero INTERGENIC
SBS Chr11 3419692 G-A Hetero INTERGENIC
SBS Chr11 3419693 T-A Hetero INTERGENIC
SBS Chr11 10691003 C-T Hetero INTRON
SBS Chr11 11367692 G-A Homo INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr12 7006844 A-G Hetero INTRON
SBS Chr12 7006852 G-T Hetero INTRON
SBS Chr12 14132115 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3546966 3546967 1 OsKitaake11g049400
Deletion Chr2 5368339 5368347 8 OsKitaake02g074000
Deletion Chr11 5679891 5679892 1
Deletion Chr4 7359447 7359459 12
Deletion Chr11 9084417 9084423 6
Deletion Chr11 9105456 9105457 1
Deletion Chr11 10467516 10467518 2
Deletion Chr2 11160131 11160133 2
Deletion Chr3 11758001 12319000 560999 58
Deletion Chr8 11849541 11849561 20
Deletion Chr12 12067489 12067491 2
Deletion Chr12 14953577 14953593 16
Deletion Chr7 19015045 19015046 1
Deletion Chr8 21604213 21604216 3
Deletion Chr7 22968365 22968370 5
Deletion Chr4 24043013 24043014 1
Deletion Chr3 35250279 35250286 7
Deletion Chr2 35586171 35586174 3 OsKitaake02g374200

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16843958 16843960 1
Insertion Chr3 6221071 6221074 2
Insertion Chr3 25655975 25655978 2
Insertion Chr6 22926360 22926363 2
Insertion Chr7 6843008 6843011 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11428485 11608087
Inversion Chr3 11609398 12319931 OsKitaake03g166000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1641469	C-A	Hetero	INTRON
SBS	Chr2	3276687	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g047600
SBS	Chr2	3992414	A-T	Hetero	INTERGENIC
SBS	Chr2	23209053	T-A	Homo	INTERGENIC
SBS	Chr2	23377542	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g228900
SBS	Chr3	8697859	C-T	Hetero	INTRON
SBS	Chr3	24789985	A-C	Hetero	INTERGENIC
SBS	Chr5	6107066	T-C	Hetero	INTERGENIC
SBS	Chr5	6207140	C-T	Hetero	INTERGENIC
SBS	Chr5	12126354	T-A	Hetero	INTERGENIC
SBS	Chr6	12122768	G-A	Homo	INTERGENIC
SBS	Chr6	15847137	A-T	Homo	INTERGENIC
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr7	1727115	G-A	Hetero	INTERGENIC
SBS	Chr8	3671523	T-C	Homo	INTERGENIC
SBS	Chr8	15722842	C-T	Homo	INTERGENIC
SBS	Chr9	14194714	T-A	Homo	INTRON
SBS	Chr10	4756055	C-A	Hetero	INTERGENIC
SBS	Chr11	3419692	G-A	Hetero	INTERGENIC
SBS	Chr11	3419693	T-A	Hetero	INTERGENIC
SBS	Chr11	10691003	C-T	Hetero	INTRON
SBS	Chr11	11367692	G-A	Homo	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr12	7006844	A-G	Hetero	INTRON
SBS	Chr12	7006852	G-T	Hetero	INTRON
SBS	Chr12	14132115	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3546966	3546967	1	OsKitaake11g049400
Deletion	Chr2	5368339	5368347	8	OsKitaake02g074000
Deletion	Chr11	5679891	5679892	1
Deletion	Chr4	7359447	7359459	12
Deletion	Chr11	9084417	9084423	6
Deletion	Chr11	9105456	9105457	1
Deletion	Chr11	10467516	10467518	2
Deletion	Chr2	11160131	11160133	2
Deletion	Chr3	11758001	12319000	560999	58
Deletion	Chr8	11849541	11849561	20
Deletion	Chr12	12067489	12067491	2
Deletion	Chr12	14953577	14953593	16
Deletion	Chr7	19015045	19015046	1
Deletion	Chr8	21604213	21604216	3
Deletion	Chr7	22968365	22968370	5
Deletion	Chr4	24043013	24043014	1
Deletion	Chr3	35250279	35250286	7
Deletion	Chr2	35586171	35586174	3	OsKitaake02g374200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11428485	11608087
Inversion	Chr3	11609398	12319931	OsKitaake03g166000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes