Search Kitaake

Mutant Information

Mutant Name	FN4304-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4304-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16753225 A-G Hetero INTERGENIC
SBS Chr1 20922598 A-C Homo INTRON
SBS Chr2 1217728 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g018500
SBS Chr2 2457553 A-G Hetero INTERGENIC
SBS Chr2 6539496 T-G Hetero INTERGENIC
SBS Chr2 10042641 G-T Homo INTRON
SBS Chr2 14610555 A-G Homo INTERGENIC
SBS Chr2 18700240 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g184000
SBS Chr2 29561014 G-T Homo SPLICE_SITE_REGION
SBS Chr3 17354594 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g214100
SBS Chr3 19051672 C-A Hetero INTRON
SBS Chr3 26365040 C-G Hetero INTERGENIC
SBS Chr4 11631174 T-A Hetero INTERGENIC
SBS Chr4 34898567 G-T Homo UTR_3_PRIME
SBS Chr5 21373868 C-A Hetero UTR_3_PRIME
SBS Chr5 25784732 G-A Hetero INTERGENIC
SBS Chr6 5001749 G-A Homo INTERGENIC
SBS Chr6 21150697 A-T Hetero INTERGENIC
SBS Chr6 28761059 G-A Hetero INTERGENIC
SBS Chr6 28829981 G-A Hetero INTERGENIC
SBS Chr6 30562468 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g287800
SBS Chr7 11480424 C-T Homo INTRON
SBS Chr7 18648728 T-C Hetero INTERGENIC
SBS Chr7 28326915 C-A Homo INTERGENIC
SBS Chr7 28383333 C-G Homo INTRON
SBS Chr7 28383356 T-C Homo INTRON
SBS Chr8 9921327 C-G Hetero INTERGENIC
SBS Chr8 21571722 C-T Homo INTERGENIC
SBS Chr9 15740092 G-A Homo INTERGENIC
SBS Chr9 21998121 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 6903950 T-G Homo INTERGENIC
SBS Chr10 11826361 G-A Homo INTERGENIC
SBS Chr11 3688575 T-A Hetero INTERGENIC
SBS Chr11 24075017 T-C Hetero INTERGENIC
SBS Chr12 21056574 C-A Hetero INTERGENIC
SBS Chr12 23023658 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2251001 2265000 13999
Deletion Chr5 6347626 6347638 12
Deletion Chr9 7404357 7404361 4
Deletion Chr7 17547793 17547797 4
Deletion Chr8 17825488 17825493 5 OsKitaake08g133101
Deletion Chr2 20351735 20351737 2
Deletion Chr10 22810657 22810750 93
Deletion Chr3 26364442 26364458 16
Deletion Chr4 32646001 32654000 7999 OsKitaake04g262300
Deletion Chr1 38738346 38738396 50

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22396392 22396397 4
Insertion Chr6 27852578 27852580 1
Insertion Chr9 12292683 12292688 4
Insertion Chr5 30229879 30229881 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 3502683 3973419
Inversion Chr3 3785677 3960518 OsKitaake03g053200

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 24256738 Chr5 29243527 OsKitaake05g277300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16753225	A-G	Hetero	INTERGENIC
SBS	Chr1	20922598	A-C	Homo	INTRON
SBS	Chr2	1217728	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g018500
SBS	Chr2	2457553	A-G	Hetero	INTERGENIC
SBS	Chr2	6539496	T-G	Hetero	INTERGENIC
SBS	Chr2	10042641	G-T	Homo	INTRON
SBS	Chr2	14610555	A-G	Homo	INTERGENIC
SBS	Chr2	18700240	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g184000
SBS	Chr2	29561014	G-T	Homo	SPLICE_SITE_REGION
SBS	Chr3	17354594	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g214100
SBS	Chr3	19051672	C-A	Hetero	INTRON
SBS	Chr3	26365040	C-G	Hetero	INTERGENIC
SBS	Chr4	11631174	T-A	Hetero	INTERGENIC
SBS	Chr4	34898567	G-T	Homo	UTR_3_PRIME
SBS	Chr5	21373868	C-A	Hetero	UTR_3_PRIME
SBS	Chr5	25784732	G-A	Hetero	INTERGENIC
SBS	Chr6	5001749	G-A	Homo	INTERGENIC
SBS	Chr6	21150697	A-T	Hetero	INTERGENIC
SBS	Chr6	28761059	G-A	Hetero	INTERGENIC
SBS	Chr6	28829981	G-A	Hetero	INTERGENIC
SBS	Chr6	30562468	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g287800
SBS	Chr7	11480424	C-T	Homo	INTRON
SBS	Chr7	18648728	T-C	Hetero	INTERGENIC
SBS	Chr7	28326915	C-A	Homo	INTERGENIC
SBS	Chr7	28383333	C-G	Homo	INTRON
SBS	Chr7	28383356	T-C	Homo	INTRON
SBS	Chr8	9921327	C-G	Hetero	INTERGENIC
SBS	Chr8	21571722	C-T	Homo	INTERGENIC
SBS	Chr9	15740092	G-A	Homo	INTERGENIC
SBS	Chr9	21998121	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6903950	T-G	Homo	INTERGENIC
SBS	Chr10	11826361	G-A	Homo	INTERGENIC
SBS	Chr11	3688575	T-A	Hetero	INTERGENIC
SBS	Chr11	24075017	T-C	Hetero	INTERGENIC
SBS	Chr12	21056574	C-A	Hetero	INTERGENIC
SBS	Chr12	23023658	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2251001	2265000	13999
Deletion	Chr5	6347626	6347638	12
Deletion	Chr9	7404357	7404361	4
Deletion	Chr7	17547793	17547797	4
Deletion	Chr8	17825488	17825493	5	OsKitaake08g133101
Deletion	Chr2	20351735	20351737	2
Deletion	Chr10	22810657	22810750	93
Deletion	Chr3	26364442	26364458	16
Deletion	Chr4	32646001	32654000	7999	OsKitaake04g262300
Deletion	Chr1	38738346	38738396	50

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3502683	3973419
Inversion	Chr3	3785677	3960518	OsKitaake03g053200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes