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Mutant Information

Mutant Name	FN4305-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4305-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7755996 C-T Hetero INTERGENIC
SBS Chr1 11391829 G-A Homo INTERGENIC
SBS Chr1 29750125 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g292300
SBS Chr1 30343863 G-A Hetero INTERGENIC
SBS Chr1 31928334 C-T Hetero INTRON
SBS Chr1 35340924 A-G Hetero INTRON
SBS Chr1 38493965 C-T Hetero INTERGENIC
SBS Chr1 43171632 C-T Homo INTERGENIC
SBS Chr2 30038931 G-A Homo INTERGENIC
SBS Chr3 5217034 C-A Hetero INTERGENIC
SBS Chr3 16921187 A-C Hetero INTRON
SBS Chr3 25084121 C-G Homo INTERGENIC
SBS Chr3 26868972 C-T Homo INTERGENIC
SBS Chr3 37709440 A-G Hetero INTRON
SBS Chr4 10962448 C-A Homo INTERGENIC
SBS Chr4 16679654 G-T Hetero INTRON
SBS Chr4 17200395 C-A Homo INTERGENIC
SBS Chr4 27817986 T-A Hetero INTERGENIC
SBS Chr4 29038454 A-T Hetero INTERGENIC
SBS Chr4 33375017 T-C Hetero INTRON
SBS Chr4 34606629 G-A Hetero UTR_3_PRIME
SBS Chr5 335233 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g004900
SBS Chr5 11135744 C-T Hetero INTERGENIC
SBS Chr5 15037760 A-G Hetero INTERGENIC
SBS Chr6 16368763 C-A Hetero INTERGENIC
SBS Chr6 28372418 A-T Homo INTERGENIC
SBS Chr6 28558411 G-A Homo INTERGENIC
SBS Chr6 28558412 T-A Homo INTERGENIC
SBS Chr7 4493339 C-A Hetero INTERGENIC
SBS Chr7 16953772 T-A Homo INTRON
SBS Chr7 19827073 T-C Homo INTERGENIC
SBS Chr8 17875563 T-C Homo INTERGENIC
SBS Chr9 2639239 C-A Hetero INTERGENIC
SBS Chr9 9089696 T-C Hetero INTERGENIC
SBS Chr9 9129077 T-G Hetero INTERGENIC
SBS Chr9 17867450 C-T Homo INTERGENIC
SBS Chr9 21347054 A-G Homo INTERGENIC
SBS Chr10 10538946 G-A Hetero INTERGENIC
SBS Chr10 21848201 T-A Hetero INTRON
SBS Chr11 241345 A-T Hetero INTERGENIC
SBS Chr11 3825417 A-T Hetero INTERGENIC
SBS Chr11 5389679 G-C Homo INTERGENIC
SBS Chr11 8246583 G-A Hetero INTERGENIC
SBS Chr11 16229139 C-T Hetero INTERGENIC
SBS Chr11 21848487 A-T Hetero INTERGENIC
SBS Chr11 22087340 G-C Hetero INTRON
SBS Chr12 1152548 G-T Homo INTERGENIC
SBS Chr12 12319075 G-C Hetero INTERGENIC
SBS Chr12 13082517 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 20982118 G-C Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2106001 2169000 62999 2
Deletion Chr2 2340164 2340172 8
Deletion Chr4 2652001 2692000 39999 OsKitaake04g015800
Deletion Chr10 3676749 3676755 6
Deletion Chr1 7296372 7296374 2
Deletion Chr12 7999508 7999510 2
Deletion Chr9 8725001 8735000 9999 OsKitaake09g051250
Deletion Chr10 11386817 11386823 6
Deletion Chr6 11683155 11683157 2
Deletion Chr3 17529568 17529574 6
Deletion Chr2 18964869 18964876 7
Deletion Chr11 20063333 20063338 5
Deletion Chr10 21856481 21856491 10
Deletion Chr11 22522616 22522627 11
Deletion Chr8 23723400 23723402 2
Deletion Chr12 25352123 25352129 6
Deletion Chr6 27177397 27177408 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 7055691 7055694 2
Insertion Chr7 15393591 15393594 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 2107460 2655238
Inversion Chr4 2166459 2557225
Inversion Chr4 30457212 30488270 OsKitaake04g235200
Inversion Chr4 30457224 30488278 OsKitaake04g235200
Inversion Chr1 32102233 32122199
Inversion Chr1 32102239 32122208

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16534263 Chr1 41763834
Translocation Chr10 16534556 Chr1 41763838

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7755996	C-T	Hetero	INTERGENIC
SBS	Chr1	11391829	G-A	Homo	INTERGENIC
SBS	Chr1	29750125	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g292300
SBS	Chr1	30343863	G-A	Hetero	INTERGENIC
SBS	Chr1	31928334	C-T	Hetero	INTRON
SBS	Chr1	35340924	A-G	Hetero	INTRON
SBS	Chr1	38493965	C-T	Hetero	INTERGENIC
SBS	Chr1	43171632	C-T	Homo	INTERGENIC
SBS	Chr2	30038931	G-A	Homo	INTERGENIC
SBS	Chr3	5217034	C-A	Hetero	INTERGENIC
SBS	Chr3	16921187	A-C	Hetero	INTRON
SBS	Chr3	25084121	C-G	Homo	INTERGENIC
SBS	Chr3	26868972	C-T	Homo	INTERGENIC
SBS	Chr3	37709440	A-G	Hetero	INTRON
SBS	Chr4	10962448	C-A	Homo	INTERGENIC
SBS	Chr4	16679654	G-T	Hetero	INTRON
SBS	Chr4	17200395	C-A	Homo	INTERGENIC
SBS	Chr4	27817986	T-A	Hetero	INTERGENIC
SBS	Chr4	29038454	A-T	Hetero	INTERGENIC
SBS	Chr4	33375017	T-C	Hetero	INTRON
SBS	Chr4	34606629	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	335233	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g004900
SBS	Chr5	11135744	C-T	Hetero	INTERGENIC
SBS	Chr5	15037760	A-G	Hetero	INTERGENIC
SBS	Chr6	16368763	C-A	Hetero	INTERGENIC
SBS	Chr6	28372418	A-T	Homo	INTERGENIC
SBS	Chr6	28558411	G-A	Homo	INTERGENIC
SBS	Chr6	28558412	T-A	Homo	INTERGENIC
SBS	Chr7	4493339	C-A	Hetero	INTERGENIC
SBS	Chr7	16953772	T-A	Homo	INTRON
SBS	Chr7	19827073	T-C	Homo	INTERGENIC
SBS	Chr8	17875563	T-C	Homo	INTERGENIC
SBS	Chr9	2639239	C-A	Hetero	INTERGENIC
SBS	Chr9	9089696	T-C	Hetero	INTERGENIC
SBS	Chr9	9129077	T-G	Hetero	INTERGENIC
SBS	Chr9	17867450	C-T	Homo	INTERGENIC
SBS	Chr9	21347054	A-G	Homo	INTERGENIC
SBS	Chr10	10538946	G-A	Hetero	INTERGENIC
SBS	Chr10	21848201	T-A	Hetero	INTRON
SBS	Chr11	241345	A-T	Hetero	INTERGENIC
SBS	Chr11	3825417	A-T	Hetero	INTERGENIC
SBS	Chr11	5389679	G-C	Homo	INTERGENIC
SBS	Chr11	8246583	G-A	Hetero	INTERGENIC
SBS	Chr11	16229139	C-T	Hetero	INTERGENIC
SBS	Chr11	21848487	A-T	Hetero	INTERGENIC
SBS	Chr11	22087340	G-C	Hetero	INTRON
SBS	Chr12	1152548	G-T	Homo	INTERGENIC
SBS	Chr12	12319075	G-C	Hetero	INTERGENIC
SBS	Chr12	13082517	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	20982118	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2106001	2169000	62999	2
Deletion	Chr2	2340164	2340172	8
Deletion	Chr4	2652001	2692000	39999	OsKitaake04g015800
Deletion	Chr10	3676749	3676755	6
Deletion	Chr1	7296372	7296374	2
Deletion	Chr12	7999508	7999510	2
Deletion	Chr9	8725001	8735000	9999	OsKitaake09g051250
Deletion	Chr10	11386817	11386823	6
Deletion	Chr6	11683155	11683157	2
Deletion	Chr3	17529568	17529574	6
Deletion	Chr2	18964869	18964876	7
Deletion	Chr11	20063333	20063338	5
Deletion	Chr10	21856481	21856491	10
Deletion	Chr11	22522616	22522627	11
Deletion	Chr8	23723400	23723402	2
Deletion	Chr12	25352123	25352129	6
Deletion	Chr6	27177397	27177408	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2107460	2655238
Inversion	Chr4	2166459	2557225
Inversion	Chr4	30457212	30488270	OsKitaake04g235200
Inversion	Chr4	30457224	30488278	OsKitaake04g235200
Inversion	Chr1	32102233	32122199
Inversion	Chr1	32102239	32122208

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes