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| Mutant Information |
|---|
| Mutant Name | FN4311-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4311-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5230941 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 17845451 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 17847678 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 31752853 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 31752854 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g319200 |
| SBS | Chr1 | 39841603 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3262210 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15229135 | C-A | Homo | START_GAINED | |
| SBS | Chr2 | 15229136 | T-A | Homo | UTR_5_PRIME | |
| SBS | Chr2 | 32079424 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g327700 |
| SBS | Chr3 | 18807 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 6793428 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 17335765 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 28753105 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18332650 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 36907256 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25128801 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25128802 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 5988014 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24910563 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30106770 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16560896 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17587738 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 7246244 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13868277 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 17328919 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14710912 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 16342006 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 129582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5511059 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23634121 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2006164 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 10598444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26283538 | A-G | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 396248 | 396261 | 13 | |
| Deletion | Chr9 | 1619564 | 1619573 | 9 | |
| Deletion | Chr1 | 3722307 | 3722308 | 1 | |
| Deletion | Chr9 | 9350001 | 9390000 | 39999 | 2 |
| Deletion | Chr9 | 14717001 | 14788000 | 70999 | 4 |
| Deletion | Chr8 | 15318324 | 15318328 | 4 | |
| Deletion | Chr2 | 16197466 | 16197470 | 4 | |
| Deletion | Chr10 | 17824538 | 17824540 | 2 | |
| Deletion | Chr7 | 26358193 | 26358195 | 2 | OsKitaake07g242700 |
| Deletion | Chr8 | 27956237 | 27956239 | 2 | |
| Deletion | Chr1 | 36290001 | 36290002 | 1 | |
| Deletion | Chr3 | 37323423 | 37323424 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 6045295 | 6045298 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4564496 | 4674116 | OsKitaake05g053400 |
| Inversion | Chr5 | 4564504 | 4674118 | OsKitaake05g053400 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 14711431 | Chr5 | 23078868 | OsKitaake05g191900 |
| Translocation | Chr9 | 14785713 | Chr5 | 23078887 | 2 |