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Mutant Information

Mutant Name	FN4312-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4312-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 535941 C-T Hetero INTRON
SBS Chr1 2832911 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g035900
SBS Chr1 10448866 A-G Homo INTERGENIC
SBS Chr1 29765450 C-T Homo INTERGENIC
SBS Chr2 830646 G-A Hetero INTERGENIC
SBS Chr2 4488699 A-C Hetero INTRON
SBS Chr2 25464148 G-A Hetero INTERGENIC
SBS Chr3 3270467 A-G Hetero INTRON
SBS Chr3 17212791 T-A Hetero INTERGENIC
SBS Chr3 19105757 G-C Hetero INTERGENIC
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr4 4468308 T-C Hetero INTERGENIC
SBS Chr4 8044252 C-A Homo STOP_GAINED OsKitaake04g042100
SBS Chr4 8044253 C-T Homo SYNONYMOUS_CODING
SBS Chr4 33046602 G-A Hetero INTERGENIC
SBS Chr4 34770951 A-T Hetero INTERGENIC
SBS Chr5 1040705 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 1916721 C-A Hetero INTERGENIC
SBS Chr5 19114155 C-T Hetero INTERGENIC
SBS Chr6 8733068 G-C Hetero INTERGENIC
SBS Chr6 15893613 G-T Hetero INTERGENIC
SBS Chr6 18270805 C-T Hetero INTERGENIC
SBS Chr6 19922758 G-A Hetero INTERGENIC
SBS Chr6 20389312 G-A Hetero INTERGENIC
SBS Chr7 10887648 G-A Hetero INTERGENIC
SBS Chr7 11295247 G-T Hetero INTERGENIC
SBS Chr7 14983183 C-A Hetero INTERGENIC
SBS Chr8 15064887 G-A Hetero INTERGENIC
SBS Chr9 2145487 G-A Homo INTERGENIC
SBS Chr9 22600790 A-T Homo INTERGENIC
SBS Chr9 22600791 A-T Homo INTERGENIC
SBS Chr10 8872269 C-G Homo INTERGENIC
SBS Chr10 17555355 A-T Hetero INTRON
SBS Chr11 10311230 G-A Hetero INTERGENIC
SBS Chr11 14855573 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g122600
SBS Chr11 22173326 A-G Hetero INTERGENIC
SBS Chr12 40166 C-G Hetero INTERGENIC
SBS Chr12 7442433 T-C Hetero UTR_3_PRIME
SBS Chr12 17701270 G-T Hetero INTERGENIC
SBS Chr12 21913205 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g171700
SBS Chr12 22362610 C-T Hetero INTERGENIC
SBS Chr12 22827844 A-T Hetero INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 999834 999836 2
Deletion Chr11 5046120 5046124 4
Deletion Chr11 8277001 8326000 48999 3
Deletion Chr4 12118883 12118885 2
Deletion Chr8 13369167 13369168 1
Deletion Chr2 14045001 14094000 48999 5
Deletion Chr6 15613918 15613921 3
Deletion Chr9 16315087 16315089 2
Deletion Chr7 20178799 20178804 5
Deletion Chr7 21356882 21356883 1
Deletion Chr6 22474882 22474887 5
Deletion Chr2 28137899 28137901 2
Deletion Chr1 29655812 29655818 6
Deletion Chr1 34410287 34410288 1
Deletion Chr3 35978354 35978355 1 OsKitaake03g396900

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2948458 2948461 2
Insertion Chr6 24513431 24513433 1
Insertion Chr7 23580630 23580632 1
Insertion Chr4 22525662 22525665 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6736556 6896858
Inversion Chr11 19344162 20125532
Inversion Chr11 19624483 20125539 OsKitaake11g153000
Inversion Chr2 35052526 35417669 OsKitaake02g366300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 10800058 Chr2 21068840 OsKitaake02g202800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	535941	C-T	Hetero	INTRON
SBS	Chr1	2832911	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g035900
SBS	Chr1	10448866	A-G	Homo	INTERGENIC
SBS	Chr1	29765450	C-T	Homo	INTERGENIC
SBS	Chr2	830646	G-A	Hetero	INTERGENIC
SBS	Chr2	4488699	A-C	Hetero	INTRON
SBS	Chr2	25464148	G-A	Hetero	INTERGENIC
SBS	Chr3	3270467	A-G	Hetero	INTRON
SBS	Chr3	17212791	T-A	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr4	4468308	T-C	Hetero	INTERGENIC
SBS	Chr4	8044252	C-A	Homo	STOP_GAINED	OsKitaake04g042100
SBS	Chr4	8044253	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	33046602	G-A	Hetero	INTERGENIC
SBS	Chr4	34770951	A-T	Hetero	INTERGENIC
SBS	Chr5	1040705	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	1916721	C-A	Hetero	INTERGENIC
SBS	Chr5	19114155	C-T	Hetero	INTERGENIC
SBS	Chr6	8733068	G-C	Hetero	INTERGENIC
SBS	Chr6	15893613	G-T	Hetero	INTERGENIC
SBS	Chr6	18270805	C-T	Hetero	INTERGENIC
SBS	Chr6	19922758	G-A	Hetero	INTERGENIC
SBS	Chr6	20389312	G-A	Hetero	INTERGENIC
SBS	Chr7	10887648	G-A	Hetero	INTERGENIC
SBS	Chr7	11295247	G-T	Hetero	INTERGENIC
SBS	Chr7	14983183	C-A	Hetero	INTERGENIC
SBS	Chr8	15064887	G-A	Hetero	INTERGENIC
SBS	Chr9	2145487	G-A	Homo	INTERGENIC
SBS	Chr9	22600790	A-T	Homo	INTERGENIC
SBS	Chr9	22600791	A-T	Homo	INTERGENIC
SBS	Chr10	8872269	C-G	Homo	INTERGENIC
SBS	Chr10	17555355	A-T	Hetero	INTRON
SBS	Chr11	10311230	G-A	Hetero	INTERGENIC
SBS	Chr11	14855573	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g122600
SBS	Chr11	22173326	A-G	Hetero	INTERGENIC
SBS	Chr12	40166	C-G	Hetero	INTERGENIC
SBS	Chr12	7442433	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	17701270	G-T	Hetero	INTERGENIC
SBS	Chr12	21913205	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g171700
SBS	Chr12	22362610	C-T	Hetero	INTERGENIC
SBS	Chr12	22827844	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	999834	999836	2
Deletion	Chr11	5046120	5046124	4
Deletion	Chr11	8277001	8326000	48999	3
Deletion	Chr4	12118883	12118885	2
Deletion	Chr8	13369167	13369168	1
Deletion	Chr2	14045001	14094000	48999	5
Deletion	Chr6	15613918	15613921	3
Deletion	Chr9	16315087	16315089	2
Deletion	Chr7	20178799	20178804	5
Deletion	Chr7	21356882	21356883	1
Deletion	Chr6	22474882	22474887	5
Deletion	Chr2	28137899	28137901	2
Deletion	Chr1	29655812	29655818	6
Deletion	Chr1	34410287	34410288	1
Deletion	Chr3	35978354	35978355	1	OsKitaake03g396900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6736556	6896858
Inversion	Chr11	19344162	20125532
Inversion	Chr11	19624483	20125539	OsKitaake11g153000
Inversion	Chr2	35052526	35417669	OsKitaake02g366300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes