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Mutant Information

Mutant Name	FN4314-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4314-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15460396 C-T Homo SYNONYMOUS_CODING
SBS Chr1 16688106 T-C Homo INTERGENIC
SBS Chr1 29248745 A-G Hetero INTERGENIC
SBS Chr2 24124681 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g237500
SBS Chr2 24868745 C-T Hetero INTERGENIC
SBS Chr2 27758575 A-T Homo UTR_3_PRIME
SBS Chr2 28898642 G-A Hetero INTERGENIC
SBS Chr2 30142493 G-A Hetero INTERGENIC
SBS Chr2 32442267 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g331800
SBS Chr2 32682067 C-T Hetero INTERGENIC
SBS Chr3 6122956 G-A Hetero INTRON
SBS Chr3 8259844 T-A Hetero INTERGENIC
SBS Chr3 19431446 A-G Hetero INTERGENIC
SBS Chr4 5923783 G-A Homo INTERGENIC
SBS Chr4 17552388 G-C Hetero STOP_GAINED OsKitaake04g087500
SBS Chr4 27817436 T-A Hetero INTERGENIC
SBS Chr4 29429399 A-T Hetero INTRON
SBS Chr7 16136337 T-A Hetero INTERGENIC
SBS Chr7 16136341 A-G Hetero INTERGENIC
SBS Chr7 23360567 A-G Hetero INTERGENIC
SBS Chr7 26041653 G-A Hetero INTERGENIC
SBS Chr8 6378464 T-C Hetero INTERGENIC
SBS Chr8 11463196 C-A Hetero INTERGENIC
SBS Chr8 22850908 G-A Homo INTERGENIC
SBS Chr9 12489674 A-T Hetero INTRON
SBS Chr10 3915422 C-G Hetero INTERGENIC
SBS Chr10 5267500 T-G Hetero INTERGENIC
SBS Chr11 13789713 G-A Hetero INTERGENIC
SBS Chr11 15023720 T-A Hetero INTRON
SBS Chr11 15505096 T-A Hetero INTERGENIC
SBS Chr11 16321979 T-A Hetero INTERGENIC
SBS Chr11 17093547 C-G Hetero INTERGENIC
SBS Chr11 17093551 T-A Hetero INTERGENIC
SBS Chr11 18522628 A-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 7393083 7393084 1 OsKitaake07g082700
Deletion Chr3 7425291 7425296 5
Deletion Chr9 9331120 9331129 9
Deletion Chr4 9386687 9386707 20
Deletion Chr8 9576126 9576139 13 OsKitaake08g089900
Deletion Chr11 10695066 10695071 5
Deletion Chr8 13828903 13828908 5
Deletion Chr2 21278437 21278438 1 OsKitaake02g205200
Deletion Chr12 22512328 22512332 4
Deletion Chr10 23758178 23758179 1
Deletion Chr11 24443391 24443393 2
Deletion Chr8 26424001 26424004 3
Deletion Chr3 28029799 28029807 8
Deletion Chr11 28263168 28263172 4
Deletion Chr3 29711027 29711029 2
Deletion Chr2 35066790 35066793 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11646799 11646802 2
Insertion Chr2 23465704 23465707 2
Insertion Chr3 18785687 18785690 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 17956698 18146331
Inversion Chr1 18294368 18480977
Inversion Chr3 27623996 27686073
Inversion Chr3 27624013 27686076

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7746822 Chr4 2089226
Translocation Chr9 12202754 Chr7 23774774 2
Translocation Chr9 12236210 Chr7 23774743 2
Translocation Chr8 15299884 Chr1 1514334
Translocation Chr5 28744404 Chr4 30128084
Translocation Chr5 28744843 Chr4 30043301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15460396	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	16688106	T-C	Homo	INTERGENIC
SBS	Chr1	29248745	A-G	Hetero	INTERGENIC
SBS	Chr2	24124681	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g237500
SBS	Chr2	24868745	C-T	Hetero	INTERGENIC
SBS	Chr2	27758575	A-T	Homo	UTR_3_PRIME
SBS	Chr2	28898642	G-A	Hetero	INTERGENIC
SBS	Chr2	30142493	G-A	Hetero	INTERGENIC
SBS	Chr2	32442267	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g331800
SBS	Chr2	32682067	C-T	Hetero	INTERGENIC
SBS	Chr3	6122956	G-A	Hetero	INTRON
SBS	Chr3	8259844	T-A	Hetero	INTERGENIC
SBS	Chr3	19431446	A-G	Hetero	INTERGENIC
SBS	Chr4	5923783	G-A	Homo	INTERGENIC
SBS	Chr4	17552388	G-C	Hetero	STOP_GAINED	OsKitaake04g087500
SBS	Chr4	27817436	T-A	Hetero	INTERGENIC
SBS	Chr4	29429399	A-T	Hetero	INTRON
SBS	Chr7	16136337	T-A	Hetero	INTERGENIC
SBS	Chr7	16136341	A-G	Hetero	INTERGENIC
SBS	Chr7	23360567	A-G	Hetero	INTERGENIC
SBS	Chr7	26041653	G-A	Hetero	INTERGENIC
SBS	Chr8	6378464	T-C	Hetero	INTERGENIC
SBS	Chr8	11463196	C-A	Hetero	INTERGENIC
SBS	Chr8	22850908	G-A	Homo	INTERGENIC
SBS	Chr9	12489674	A-T	Hetero	INTRON
SBS	Chr10	3915422	C-G	Hetero	INTERGENIC
SBS	Chr10	5267500	T-G	Hetero	INTERGENIC
SBS	Chr11	13789713	G-A	Hetero	INTERGENIC
SBS	Chr11	15023720	T-A	Hetero	INTRON
SBS	Chr11	15505096	T-A	Hetero	INTERGENIC
SBS	Chr11	16321979	T-A	Hetero	INTERGENIC
SBS	Chr11	17093547	C-G	Hetero	INTERGENIC
SBS	Chr11	17093551	T-A	Hetero	INTERGENIC
SBS	Chr11	18522628	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	7393083	7393084	1	OsKitaake07g082700
Deletion	Chr3	7425291	7425296	5
Deletion	Chr9	9331120	9331129	9
Deletion	Chr4	9386687	9386707	20
Deletion	Chr8	9576126	9576139	13	OsKitaake08g089900
Deletion	Chr11	10695066	10695071	5
Deletion	Chr8	13828903	13828908	5
Deletion	Chr2	21278437	21278438	1	OsKitaake02g205200
Deletion	Chr12	22512328	22512332	4
Deletion	Chr10	23758178	23758179	1
Deletion	Chr11	24443391	24443393	2
Deletion	Chr8	26424001	26424004	3
Deletion	Chr3	28029799	28029807	8
Deletion	Chr11	28263168	28263172	4
Deletion	Chr3	29711027	29711029	2
Deletion	Chr2	35066790	35066793	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17956698	18146331
Inversion	Chr1	18294368	18480977
Inversion	Chr3	27623996	27686073
Inversion	Chr3	27624013	27686076

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes