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| Mutant Information |
|---|
| Mutant Name | FN4325-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4325-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 42
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 5457384 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 27048258 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29363005 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29363006 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29363036 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 31536050 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2730668 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 12614331 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13564645 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16595734 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17595437 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 21705976 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 24937591 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30574850 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 13456476 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13456477 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14375405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 808883 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14115534 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30175623 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g283200 |
| SBS | Chr6 | 31001174 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10231382 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25832797 | A-C | Homo | INTRON | |
| SBS | Chr8 | 5037726 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15174402 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 16984467 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28095860 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1590157 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 11529071 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20562059 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 21482494 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5992894 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 985137 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2357526 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 3816849 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13669221 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15194707 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 7064963 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13225769 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15268726 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18690758 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 25788651 | A-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 5419845 | 5419857 | 12 | |
| Deletion | Chr2 | 10558339 | 10558341 | 2 | |
| Deletion | Chr8 | 14938453 | 14938461 | 8 | |
| Deletion | Chr12 | 17643601 | 17643614 | 13 | |
| Deletion | Chr9 | 18372124 | 18372127 | 3 | |
| Deletion | Chr1 | 20093347 | 20093348 | 1 | |
| Deletion | Chr9 | 20159365 | 20159368 | 3 | |
| Deletion | Chr2 | 24855001 | 24902000 | 46999 | |
| Deletion | Chr5 | 27740005 | 27740007 | 2 | OsKitaake05g253800 |
| Deletion | Chr4 | 28290054 | 28290056 | 2 | |
| Deletion | Chr4 | 32196605 | 32196609 | 4 | OsKitaake04g256000 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 13525053 | 13525056 | 2 | OsKitaake10g081500  |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 12376305 | 12654699 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13671551 | Chr4 | 7731168 | |
| Translocation | Chr11 | 13725737 | Chr4 | 7731155 |