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| Mutant Information |
|---|
| Mutant Name | FN433-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN433-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11082001 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 17259691 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 22884324 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 13665768 | A-C | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 18691214 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 17237924 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17584964 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 14711718 | G-C | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 11597307 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12319931 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 5047001 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13134770 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 16151626 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 18380514 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9331029 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g054400 |
| SBS | Chr10 | 20211432 | A-G | Homo | INTRON | |
| SBS | Chr11 | 23414490 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 2877046 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 2924818 | G-A | Hetero | INTRON |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2841001 | 2874000 | 32999 | 4 |
| Deletion | Chr1 | 4335180 | 4335186 | 6 | |
| Deletion | Chr1 | 10734001 | 10752000 | 17999 | OsKitaake01g133000 |
| Deletion | Chr12 | 14011704 | 14011705 | 1 | |
| Deletion | Chr4 | 17722892 | 17722893 | 1 | |
| Deletion | Chr1 | 18319526 | 18319528 | 2 | |
| Deletion | Chr6 | 19481924 | 19481925 | 1 | |
| Deletion | Chr8 | 24442001 | 24459000 | 16999 | 3 |
| Deletion | Chr6 | 26620001 | 26643000 | 22999 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 12424107 | 12424109 | 1 | |
| Insertion | Chr9 | 2754476 | 2754478 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 5567844 | 5568012 | |
| Inversion | Chr4 | 31240845 | 31241379 | OsKitaake04g243700 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 2839182 | Chr3 | 24145233 | |
| Translocation | Chr12 | 2841281 | Chr3 | 24145227 | |
| Translocation | Chr10 | 16295855 | Chr3 | 15803145 | OsKitaake10g109700 |
| Translocation | Chr10 | 16326392 | Chr3 | 15803142 | OsKitaake10g110100 |
| Translocation | Chr11 | 23904620 | Chr8 | 9578007 | OsKitaake08g089900 |