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Mutant Information

Mutant Name	FN434-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN434-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8273836 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g102800
SBS Chr2 7528062 G-A Hetero INTERGENIC
SBS Chr2 8713815 A-G Hetero UTR_3_PRIME
SBS Chr2 18196649 A-C Hetero INTERGENIC
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr3 22539526 G-A Hetero INTERGENIC
SBS Chr4 11941328 T-C Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr5 9081509 G-A Homo INTERGENIC
SBS Chr5 16256521 G-T Homo INTERGENIC
SBS Chr5 22559081 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g185000
SBS Chr5 24766194 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 24766195 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g203200
SBS Chr6 6094054 G-A Hetero INTERGENIC
SBS Chr6 15933990 G-A Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 12690466 C-T Hetero INTERGENIC
SBS Chr7 20857243 G-A Hetero INTERGENIC
SBS Chr7 23972006 T-G Hetero UTR_5_PRIME
SBS Chr7 25002096 C-A Hetero INTERGENIC
SBS Chr9 611873 T-A Hetero INTERGENIC
SBS Chr9 703678 A-G Hetero INTERGENIC
SBS Chr9 5792556 T-G Hetero INTERGENIC
SBS Chr9 13190962 C-T Hetero INTERGENIC
SBS Chr10 15487181 T-G Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 18354010 C-T Hetero INTERGENIC
SBS Chr11 25050092 C-T Hetero INTRON
SBS Chr12 21026733 A-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1608388 1608390 2
Deletion Chr12 4429001 4461000 31999 OsKitaake12g060000
Deletion Chr8 7665299 7665307 8
Deletion Chr8 8425256 8425261 5
Deletion Chr10 9267791 9267792 1
Deletion Chr5 9820779 9820785 6
Deletion Chr6 18099415 18099541 126
Deletion Chr2 18928001 19080000 151999 8
Deletion Chr2 36310353 36310359 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 31438687 31438690 2
Insertion Chr5 6785620 6785623 2
Insertion Chr10 21147975 21147978 2
Insertion Chr11 7449308 7449311 2
Insertion Chr12 4052293 4052296 2
Insertion Chr1 12807083 12807086 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 37159340 37426533 2
Inversion Chr3 37159383 37426539 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 14051713 Chr4 12211728
Translocation Chr8 14055965 Chr4 12211722

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8273836	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g102800
SBS	Chr2	7528062	G-A	Hetero	INTERGENIC
SBS	Chr2	8713815	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	18196649	A-C	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr3	22539526	G-A	Hetero	INTERGENIC
SBS	Chr4	11941328	T-C	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr5	9081509	G-A	Homo	INTERGENIC
SBS	Chr5	16256521	G-T	Homo	INTERGENIC
SBS	Chr5	22559081	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g185000
SBS	Chr5	24766194	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	24766195	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g203200
SBS	Chr6	6094054	G-A	Hetero	INTERGENIC
SBS	Chr6	15933990	G-A	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	12690466	C-T	Hetero	INTERGENIC
SBS	Chr7	20857243	G-A	Hetero	INTERGENIC
SBS	Chr7	23972006	T-G	Hetero	UTR_5_PRIME
SBS	Chr7	25002096	C-A	Hetero	INTERGENIC
SBS	Chr9	611873	T-A	Hetero	INTERGENIC
SBS	Chr9	703678	A-G	Hetero	INTERGENIC
SBS	Chr9	5792556	T-G	Hetero	INTERGENIC
SBS	Chr9	13190962	C-T	Hetero	INTERGENIC
SBS	Chr10	15487181	T-G	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	18354010	C-T	Hetero	INTERGENIC
SBS	Chr11	25050092	C-T	Hetero	INTRON
SBS	Chr12	21026733	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1608388	1608390	2
Deletion	Chr12	4429001	4461000	31999	OsKitaake12g060000
Deletion	Chr8	7665299	7665307	8
Deletion	Chr8	8425256	8425261	5
Deletion	Chr10	9267791	9267792	1
Deletion	Chr5	9820779	9820785	6
Deletion	Chr6	18099415	18099541	126
Deletion	Chr2	18928001	19080000	151999	8
Deletion	Chr2	36310353	36310359	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	37159340	37426533	2
Inversion	Chr3	37159383	37426539	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes