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| Mutant Information |
|---|
| Mutant Name | FN4354-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4354-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12022291 | C-T | HET | ||
| SBS | Chr1 | 31055110 | A-T | HET | ||
| SBS | Chr1 | 39432471 | C-T | HOMO | ||
| SBS | Chr2 | 18544590 | C-T | HET | ||
| SBS | Chr2 | 19825934 | G-A | HET | ||
| SBS | Chr2 | 27909469 | C-G | HET | ||
| SBS | Chr2 | 31506716 | G-A | HOMO | ||
| SBS | Chr2 | 31506717 | C-A | HOMO | ||
| SBS | Chr3 | 6790221 | C-T | HET | ||
| SBS | Chr3 | 13518789 | G-C | HET | ||
| SBS | Chr4 | 1705059 | T-A | HET | ||
| SBS | Chr4 | 2433705 | C-T | HET | ||
| SBS | Chr4 | 3373918 | G-A | HOMO | ||
| SBS | Chr4 | 13491781 | G-T | HET | ||
| SBS | Chr4 | 15697820 | G-A | HET | ||
| SBS | Chr4 | 35600797 | A-G | HET | OsKitaake04g303800 | |
| SBS | Chr5 | 27109119 | C-G | HET | OsKitaake05g244000 | |
| SBS | Chr6 | 10888811 | G-T | HET | ||
| SBS | Chr6 | 13789511 | C-T | HET | ||
| SBS | Chr6 | 15354274 | G-A | HET | ||
| SBS | Chr6 | 15704965 | C-T | HET | ||
| SBS | Chr6 | 28522797 | C-T | HET | ||
| SBS | Chr7 | 1269304 | G-A | HET | OsKitaake07g018400 | |
| SBS | Chr7 | 4275912 | A-C | HET | ||
| SBS | Chr7 | 9609947 | T-A | HET | ||
| SBS | Chr7 | 9609950 | A-T | HOMO | ||
| SBS | Chr8 | 13256646 | T-A | HOMO | ||
| SBS | Chr8 | 16659380 | G-A | HET | ||
| SBS | Chr9 | 4829114 | C-T | HET | ||
| SBS | Chr9 | 5663196 | C-T | HET | ||
| SBS | Chr9 | 16045147 | T-C | HET | ||
| SBS | Chr9 | 21136792 | A-C | HOMO | OsKitaake09g182600 | |
| SBS | Chr10 | 2943036 | G-A | HET | ||
| SBS | Chr10 | 13189272 | C-G | HET | ||
| SBS | Chr11 | 10742306 | A-C | HOMO | ||
| SBS | Chr11 | 12876119 | G-A | HET | ||
| SBS | Chr11 | 17460112 | A-G | HET | OsKitaake11g136600 | |
| SBS | Chr12 | 1969104 | A-G | HET | ||
| SBS | Chr12 | 5390255 | C-T | HET | ||
| SBS | Chr12 | 18458075 | G-A | HET |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 355434 | 355439 | 6 | OsKitaake03g005000 |
| Deletion | Chr6 | 2076888 | 2076890 | 3 | OsKitaake06g026400 |
| Deletion | Chr6 | 5703358 | 5703397 | 40 | |
| Deletion | Chr9 | 6321123 | 6321123 | 1 | |
| Deletion | Chr6 | 11311124 | 11311125 | 2 | |
| Deletion | Chr8 | 12676238 | 12676238 | 1 | |
| Deletion | Chr10 | 14432817 | 14432817 | 1 | |
| Deletion | Chr11 | 14665159 | 14665171 | 13 | |
| Deletion | Chr9 | 16912451 | 16912519 | 69 | |
| Deletion | Chr8 | 17546732 | 17546734 | 3 | |
| Deletion | Chr10 | 18252637 | 18252674 | 38 | |
| Deletion | Chr5 | 19698530 | 19698544 | 15 | OsKitaake05g155500 |
| Deletion | Chr12 | 23253486 | 23253487 | 2 | |
| Deletion | Chr11 | 28010082 | 28010095 | 14 | |
| Deletion | Chr4 | 29108828 | 29108828 | 1 | |
| Deletion | Chr4 | 30546472 | 30546472 | 1 | |
| Deletion | Chr1 | 36342153 | 36342153 | 1 | OsKitaake01g385600 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 21714267 | 21714269 | 1 | |
| Insertion | Chr12 | 78449 | 78451 | 1 |
Inversions: 5