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| Mutant Information |
|---|
| Mutant Name | FN436-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN436-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 887301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 12404183 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13033156 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17294649 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41123160 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34639758 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7861676 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7861677 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7861678 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 18971805 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 10805580 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31725351 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11718777 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12837252 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 12837257 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14831901 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 20306456 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12727246 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 21563616 | A-G | Homo | START_GAINED | |
| SBS | Chr8 | 22161496 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 7562705 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20172278 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1417476 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 727028 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1501037 | G-T | Homo | INTRON | |
| SBS | Chr12 | 20738938 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 415548 | 415550 | 2 | OsKitaake10g002800 |
| Deletion | Chr2 | 1604420 | 1604425 | 5 | |
| Deletion | Chr2 | 2289924 | 2289927 | 3 | |
| Deletion | Chr2 | 2290900 | 2290901 | 1 | |
| Deletion | Chr10 | 4311432 | 4311442 | 10 | |
| Deletion | Chr4 | 15938353 | 15938359 | 6 | |
| Deletion | Chr1 | 17055391 | 17055393 | 2 | |
| Deletion | Chr2 | 19971039 | 19971042 | 3 | |
| Deletion | Chr8 | 21565001 | 21584000 | 18999 | 4 |
| Deletion | Chr7 | 24825089 | 24825099 | 10 | |
| Deletion | Chr4 | 25389363 | 25389368 | 5 | |
| Deletion | Chr11 | 26359001 | 26400000 | 40999 | 6 |
| Deletion | Chr8 | 28109742 | 28109744 | 2 | |
| Deletion | Chr1 | 30085218 | 30085221 | 3 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 15406837 | 15406840 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 19826148 | 19826456 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 21580607 | Chr2 | 1889776 | |
| Translocation | Chr8 | 21581364 | Chr2 | 1889770 |