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Mutant Information

Mutant Name	FN4366-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4366-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4264737 A-T HET
SBS Chr1 4266040 C-A HET
SBS Chr1 19281199 C-T HET
SBS Chr2 16122703 T-A HET
SBS Chr2 33006539 C-T HET
SBS Chr3 14903118 G-A HET
SBS Chr4 23584783 A-T HET
SBS Chr4 27103828 A-T HOMO
SBS Chr4 33711710 C-T HET
SBS Chr5 7215121 A-G HET
SBS Chr5 27386448 T-A HET
SBS Chr7 8987322 A-G HET
SBS Chr8 1129218 G-A HET OsKitaake08g015000
SBS Chr8 8443946 G-A HOMO
SBS Chr9 3682242 A-G HET
SBS Chr9 22392338 A-G HOMO
SBS Chr10 13832870 C-T HET
SBS Chr11 3689492 G-A HET
SBS Chr12 24451775 C-T HOMO

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 49153 49153 1
Deletion Chr6 6664001 6669000 5000 OsKitaake06g087200
Deletion Chr5 8092001 8117000 25000 3
Deletion Chr6 10854001 10863000 9000 OsKitaake06g121250
Deletion Chr9 12251312 12251312 1
Deletion Chr5 13150949 13150960 12
Deletion Chr6 14367819 14367822 4
Deletion Chr4 15647740 15647740 1
Deletion Chr1 16024310 16024330 21
Deletion Chr3 20157913 20157913 1
Deletion Chr6 21216019 21216021 3
Deletion Chr6 21271616 21271616 1
Deletion Chr7 26029878 26029879 2
Deletion Chr4 29583125 29583126 2
Deletion Chr3 31063753 31063753 1
Deletion Chr3 37063260 37063260 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9527366 9527368 1
Insertion Chr1 38983385 38983387 1
Insertion Chr3 26722373 26722375 1
Insertion Chr5 21945660 21945662 1
Insertion Chr10 21883890 21883892 1
Insertion Chr11 16891096 16891098 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 11908209 12324102
Inversion Chr2 11908229 12324159
Inversion Chr6 13903267 14643883 OsKitaake06g144800
Inversion Chr8 20509628 20509799 OsKitaake08g152300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6663901 Chr1 20578802 OsKitaake06g087200
Translocation Chr6 6669022 Chr1 20587037

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4264737	A-T	HET
SBS	Chr1	4266040	C-A	HET
SBS	Chr1	19281199	C-T	HET
SBS	Chr2	16122703	T-A	HET
SBS	Chr2	33006539	C-T	HET
SBS	Chr3	14903118	G-A	HET
SBS	Chr4	23584783	A-T	HET
SBS	Chr4	27103828	A-T	HOMO
SBS	Chr4	33711710	C-T	HET
SBS	Chr5	7215121	A-G	HET
SBS	Chr5	27386448	T-A	HET
SBS	Chr7	8987322	A-G	HET
SBS	Chr8	1129218	G-A	HET		OsKitaake08g015000
SBS	Chr8	8443946	G-A	HOMO
SBS	Chr9	3682242	A-G	HET
SBS	Chr9	22392338	A-G	HOMO
SBS	Chr10	13832870	C-T	HET
SBS	Chr11	3689492	G-A	HET
SBS	Chr12	24451775	C-T	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	49153	49153	1
Deletion	Chr6	6664001	6669000	5000	OsKitaake06g087200
Deletion	Chr5	8092001	8117000	25000	3
Deletion	Chr6	10854001	10863000	9000	OsKitaake06g121250
Deletion	Chr9	12251312	12251312	1
Deletion	Chr5	13150949	13150960	12
Deletion	Chr6	14367819	14367822	4
Deletion	Chr4	15647740	15647740	1
Deletion	Chr1	16024310	16024330	21
Deletion	Chr3	20157913	20157913	1
Deletion	Chr6	21216019	21216021	3
Deletion	Chr6	21271616	21271616	1
Deletion	Chr7	26029878	26029879	2
Deletion	Chr4	29583125	29583126	2
Deletion	Chr3	31063753	31063753	1
Deletion	Chr3	37063260	37063260	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11908209	12324102
Inversion	Chr2	11908229	12324159
Inversion	Chr6	13903267	14643883	OsKitaake06g144800
Inversion	Chr8	20509628	20509799	OsKitaake08g152300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes