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| Mutant Information |
|---|
| Mutant Name | FN4367-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4367-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3114791 | G-T | HOMO | ||
| SBS | Chr1 | 3114792 | A-T | HOMO | OsKitaake01g040300 | |
| SBS | Chr1 | 3114793 | G-T | HOMO | OsKitaake01g040300 | |
| SBS | Chr1 | 22658001 | C-T | HET | ||
| SBS | Chr1 | 24141523 | T-G | HOMO | ||
| SBS | Chr1 | 38457773 | C-T | HOMO | ||
| SBS | Chr1 | 41750734 | A-T | HOMO | OsKitaake01g456400 | |
| SBS | Chr2 | 3652809 | G-A | HOMO | ||
| SBS | Chr2 | 17542330 | C-T | HET | ||
| SBS | Chr2 | 25295687 | T-A | HET | ||
| SBS | Chr2 | 27207694 | T-A | HET | ||
| SBS | Chr2 | 29140834 | A-T | HET | ||
| SBS | Chr2 | 29140835 | G-T | HET | ||
| SBS | Chr2 | 29140841 | G-A | HET | ||
| SBS | Chr2 | 32527528 | G-A | HOMO | ||
| SBS | Chr2 | 33411142 | C-T | HOMO | ||
| SBS | Chr3 | 12204083 | G-A | HET | ||
| SBS | Chr3 | 12509864 | C-T | HET | ||
| SBS | Chr3 | 23105244 | C-A | HOMO | ||
| SBS | Chr3 | 23106476 | G-A | HOMO | ||
| SBS | Chr3 | 23106479 | T-C | HOMO | ||
| SBS | Chr4 | 3622805 | G-T | HOMO | ||
| SBS | Chr4 | 22517317 | C-T | HET | ||
| SBS | Chr4 | 28133736 | C-T | HOMO | ||
| SBS | Chr5 | 4343702 | G-C | HET | ||
| SBS | Chr5 | 6168070 | G-A | HET | ||
| SBS | Chr5 | 26613760 | A-T | HET | ||
| SBS | Chr6 | 104527 | G-A | HET | ||
| SBS | Chr6 | 5586307 | G-A | HET | ||
| SBS | Chr6 | 10120118 | G-A | HET | ||
| SBS | Chr6 | 20764689 | T-C | HOMO | ||
| SBS | Chr7 | 12229270 | C-G | HET | ||
| SBS | Chr7 | 13774503 | A-G | HET | ||
| SBS | Chr7 | 26179981 | G-A | HOMO | ||
| SBS | Chr7 | 26179982 | T-G | HOMO | ||
| SBS | Chr7 | 27128389 | G-A | HET | ||
| SBS | Chr8 | 4167429 | T-C | HOMO | ||
| SBS | Chr8 | 18966016 | G-A | HOMO | ||
| SBS | Chr9 | 2183710 | G-A | HOMO | ||
| SBS | Chr9 | 5464173 | C-T | HET | ||
| SBS | Chr9 | 12492117 | T-A | HET | ||
| SBS | Chr9 | 17279893 | G-A | HET | ||
| SBS | Chr9 | 18319388 | C-T | HET | ||
| SBS | Chr11 | 12965584 | G-C | HET | ||
| SBS | Chr11 | 15330657 | C-G | HET | ||
| SBS | Chr12 | 12349977 | G-C | HET | ||
| SBS | Chr12 | 23427928 | C-T | HET |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 466670 | 466671 | 2 | |
| Deletion | Chr2 | 1418602 | 1418602 | 1 | OsKitaake02g021800 |
| Deletion | Chr12 | 2760720 | 2760746 | 27 | |
| Deletion | Chr1 | 3134001 | 3181000 | 47000 | 7 |
| Deletion | Chr1 | 3183001 | 3224000 | 41000 | 6 |
| Deletion | Chr1 | 3225001 | 3233000 | 8000 | OsKitaake01g042200 |
| Deletion | Chr1 | 3274001 | 3315000 | 41000 | 5 |
| Deletion | Chr3 | 7794794 | 7794795 | 2 | |
| Deletion | Chr2 | 11386133 | 11386133 | 1 | OsKitaake02g132000 |
| Deletion | Chr7 | 12820063 | 12820063 | 1 | |
| Deletion | Chr11 | 14442735 | 14442737 | 3 | |
| Deletion | Chr1 | 14617277 | 14617278 | 2 | |
| Deletion | Chr10 | 16868669 | 16868669 | 1 | |
| Deletion | Chr1 | 33287528 | 33287528 | 1 |
Insertions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 2901619 | 2901621 | 1 | |
| Insertion | Chr2 | 31097975 | 31097977 | 1 | |
| Insertion | Chr2 | 36866297 | 36866303 | 5 | |
| Insertion | Chr5 | 25094587 | 25094589 | 1 | |
| Insertion | Chr1 | 37238760 | 37238762 | 1 | |
| Insertion | Chr3 | 12266913 | 12266915 | 1 | |
| Insertion | Chr7 | 27941300 | 27941303 | 2 | OsKitaake07g262666  |
| Insertion | Chr12 | 24724356 | 24724359 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 2131775 | 2132009 | OsKitaake02g032200 |
| Inversion | Chr9 | 11925194 | 12004956 | |
| Inversion | Chr1 | 39112421 | 39112558 |