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Mutant Information

Mutant Name	FN437-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN437-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 25711446 T-G Hetero INTERGENIC
SBS Chr1 26105531 C-T Hetero INTERGENIC
SBS Chr1 26105534 G-A Hetero INTERGENIC
SBS Chr1 26105536 A-G Hetero INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 2846156 C-T Homo INTERGENIC
SBS Chr2 14069292 T-C Homo INTERGENIC
SBS Chr3 16819809 A-T Hetero INTERGENIC
SBS Chr3 33428763 G-T Hetero INTRON
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr3 37306354 G-T Hetero INTERGENIC
SBS Chr4 12233532 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 29105374 A-G Hetero INTRON
SBS Chr6 28904439 C-T Homo INTERGENIC
SBS Chr7 9263403 C-T Homo INTERGENIC
SBS Chr7 10529822 C-T Hetero INTERGENIC
SBS Chr7 10592786 A-G Hetero INTERGENIC
SBS Chr7 12516463 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 22523715 T-A Hetero INTERGENIC
SBS Chr8 3835949 G-A Homo INTERGENIC
SBS Chr8 14138102 T-C Homo INTERGENIC
SBS Chr10 666798 A-G Hetero INTERGENIC
SBS Chr10 19752582 G-T Homo UTR_5_PRIME
SBS Chr10 20931165 C-T Hetero INTERGENIC
SBS Chr11 7076595 A-T Hetero INTERGENIC
SBS Chr11 7624368 G-T Hetero INTERGENIC
SBS Chr11 17587977 G-C Hetero INTERGENIC
SBS Chr12 10433076 G-A Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3805227 3805233 6 OsKitaake08g043800
Deletion Chr8 7606536 7606553 17
Deletion Chr1 8208001 8217000 8999 OsKitaake01g102400
Deletion Chr1 9049833 9049838 5
Deletion Chr3 10784141 10784143 2
Deletion Chr12 11719649 11719804 155
Deletion Chr3 13187773 13187775 2
Deletion Chr5 14415527 14415536 9
Deletion Chr1 15457622 15457630 8 OsKitaake01g168900
Deletion Chr12 18759001 18966000 206999 8
Deletion Chr7 18906381 18906383 2
Deletion Chr5 20410365 20410366 1
Deletion Chr2 20550466 20550788 322
Deletion Chr9 20694554 20694562 8
Deletion Chr6 21361130 21361131 1
Deletion Chr4 22290371 22290372 1
Deletion Chr1 22375586 22375588 2
Deletion Chr5 22936650 22936676 26
Deletion Chr3 22985001 23114000 128999 16
Deletion Chr8 24879056 24879057 1
Deletion Chr4 31173959 31173972 13
Deletion Chr4 32457001 32471000 13999 2
Deletion Chr4 32708100 32708106 6
Deletion Chr4 33533286 33533287 1 OsKitaake04g276300
Deletion Chr1 34967443 34967447 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 16409614 16409617 2
Insertion Chr8 6627467 6627469 1
Insertion Chr6 10794752 10794754 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 19725023 20601563
Inversion Chr7 19725027 20601564

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	25711446	T-G	Hetero	INTERGENIC
SBS	Chr1	26105531	C-T	Hetero	INTERGENIC
SBS	Chr1	26105534	G-A	Hetero	INTERGENIC
SBS	Chr1	26105536	A-G	Hetero	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	2846156	C-T	Homo	INTERGENIC
SBS	Chr2	14069292	T-C	Homo	INTERGENIC
SBS	Chr3	16819809	A-T	Hetero	INTERGENIC
SBS	Chr3	33428763	G-T	Hetero	INTRON
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr3	37306354	G-T	Hetero	INTERGENIC
SBS	Chr4	12233532	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	29105374	A-G	Hetero	INTRON
SBS	Chr6	28904439	C-T	Homo	INTERGENIC
SBS	Chr7	9263403	C-T	Homo	INTERGENIC
SBS	Chr7	10529822	C-T	Hetero	INTERGENIC
SBS	Chr7	10592786	A-G	Hetero	INTERGENIC
SBS	Chr7	12516463	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	22523715	T-A	Hetero	INTERGENIC
SBS	Chr8	3835949	G-A	Homo	INTERGENIC
SBS	Chr8	14138102	T-C	Homo	INTERGENIC
SBS	Chr10	666798	A-G	Hetero	INTERGENIC
SBS	Chr10	19752582	G-T	Homo	UTR_5_PRIME
SBS	Chr10	20931165	C-T	Hetero	INTERGENIC
SBS	Chr11	7076595	A-T	Hetero	INTERGENIC
SBS	Chr11	7624368	G-T	Hetero	INTERGENIC
SBS	Chr11	17587977	G-C	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3805227	3805233	6	OsKitaake08g043800
Deletion	Chr8	7606536	7606553	17
Deletion	Chr1	8208001	8217000	8999	OsKitaake01g102400
Deletion	Chr1	9049833	9049838	5
Deletion	Chr3	10784141	10784143	2
Deletion	Chr12	11719649	11719804	155
Deletion	Chr3	13187773	13187775	2
Deletion	Chr5	14415527	14415536	9
Deletion	Chr1	15457622	15457630	8	OsKitaake01g168900
Deletion	Chr12	18759001	18966000	206999	8
Deletion	Chr7	18906381	18906383	2
Deletion	Chr5	20410365	20410366	1
Deletion	Chr2	20550466	20550788	322
Deletion	Chr9	20694554	20694562	8
Deletion	Chr6	21361130	21361131	1
Deletion	Chr4	22290371	22290372	1
Deletion	Chr1	22375586	22375588	2
Deletion	Chr5	22936650	22936676	26
Deletion	Chr3	22985001	23114000	128999	16
Deletion	Chr8	24879056	24879057	1
Deletion	Chr4	31173959	31173972	13
Deletion	Chr4	32457001	32471000	13999	2
Deletion	Chr4	32708100	32708106	6
Deletion	Chr4	33533286	33533287	1	OsKitaake04g276300
Deletion	Chr1	34967443	34967447	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19725023	20601563
Inversion	Chr7	19725027	20601564

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes