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| Mutant Information |
|---|
| Mutant Name | FN4372-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4372-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8393636 | A-G | HOMO | ||
| SBS | Chr2 | 3513646 | T-G | HET | ||
| SBS | Chr2 | 29815528 | A-T | HET | ||
| SBS | Chr3 | 8098842 | A-G | HET | ||
| SBS | Chr3 | 12168301 | T-C | HOMO | ||
| SBS | Chr3 | 21664415 | T-A | HET | ||
| SBS | Chr4 | 2766441 | G-T | HET | ||
| SBS | Chr4 | 8473541 | T-A | HET | ||
| SBS | Chr4 | 9908867 | G-A | HET | ||
| SBS | Chr4 | 11386109 | C-T | HOMO | ||
| SBS | Chr4 | 11386112 | C-T | HOMO | ||
| SBS | Chr4 | 11525658 | A-T | HOMO | ||
| SBS | Chr4 | 19197292 | T-C | HOMO | ||
| SBS | Chr4 | 20935600 | A-G | HOMO | ||
| SBS | Chr4 | 21974501 | T-C | HOMO | ||
| SBS | Chr4 | 27395272 | A-G | HET | ||
| SBS | Chr4 | 28984972 | A-G | HOMO | ||
| SBS | Chr4 | 33638459 | C-A | HET | ||
| SBS | Chr4 | 36379377 | G-A | HOMO | ||
| SBS | Chr5 | 21202781 | G-T | HET | ||
| SBS | Chr6 | 3409064 | C-T | HET | ||
| SBS | Chr6 | 30247785 | T-C | HOMO | OsKitaake06g283500 | |
| SBS | Chr7 | 6867888 | G-A | HET | ||
| SBS | Chr7 | 6935447 | C-G | HET | ||
| SBS | Chr7 | 20827585 | C-T | HET | ||
| SBS | Chr8 | 1113540 | G-T | HET | ||
| SBS | Chr8 | 18038472 | C-T | HET | ||
| SBS | Chr9 | 8317072 | G-A | HET | ||
| SBS | Chr9 | 11926049 | C-T | HET | ||
| SBS | Chr10 | 3502016 | T-C | HOMO | ||
| SBS | Chr10 | 5737122 | G-T | HET | ||
| SBS | Chr10 | 11271856 | A-G | HET | ||
| SBS | Chr11 | 4211815 | G-A | HET | ||
| SBS | Chr11 | 15596157 | T-G | HET | ||
| SBS | Chr11 | 16767788 | T-C | HET | ||
| SBS | Chr11 | 24859752 | A-G | HET | OsKitaake11g202150 | |
| SBS | Chr12 | 9245618 | C-T | HET | ||
| SBS | Chr12 | 9280878 | T-C | HET | ||
| SBS | Chr12 | 20370518 | G-A | HET |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1246963 | 1246969 | 7 | |
| Deletion | Chr3 | 12229718 | 12229718 | 1 | OsKitaake03g165100 |
| Deletion | Chr6 | 13409040 | 13409041 | 2 | |
| Deletion | Chr2 | 13630141 | 13630141 | 1 | |
| Deletion | Chr2 | 14305705 | 14305705 | 1 | |
| Deletion | Chr1 | 18315835 | 18315839 | 5 | |
| Deletion | Chr12 | 19933540 | 19933540 | 1 | |
| Deletion | Chr7 | 21864592 | 21864598 | 7 | |
| Deletion | Chr6 | 22148881 | 22148882 | 2 | |
| Deletion | Chr4 | 22931035 | 22931036 | 2 | |
| Deletion | Chr8 | 26462247 | 26462247 | 1 | |
| Deletion | Chr1 | 28256414 | 28256415 | 2 |
Insertions: 11
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 9293455 | 9293617 | |
| Inversion | Chr10 | 19237116 | 19237271 | |
| Inversion | Chr3 | 29126905 | 29127043 |