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Mutant Information

Mutant Name	FN4378-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4378-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9739911 T-A HET
SBS Chr1 14201479 T-C HET OsKitaake01g162600
SBS Chr1 36616459 G-A HET
SBS Chr1 36616460 A-T HET
SBS Chr2 7867856 C-A HET
SBS Chr2 18926982 G-A HOMO
SBS Chr2 18926983 G-A HOMO
SBS Chr2 18926989 G-A HOMO
SBS Chr3 12912877 G-C HET OsKitaake03g173400
SBS Chr3 18670544 A-C HET
SBS Chr4 9914731 C-G HOMO
SBS Chr4 14533311 A-C HOMO
SBS Chr5 12109577 G-A HOMO
SBS Chr5 12109578 T-G HOMO
SBS Chr5 18991523 A-C HET OsKitaake05g148500
SBS Chr6 23869164 C-T HET
SBS Chr7 17189878 C-T HET
SBS Chr8 4303483 G-A HET
SBS Chr8 8500262 T-G HOMO
SBS Chr8 15078599 A-G HOMO
SBS Chr8 25340904 A-G HOMO
SBS Chr9 991774 G-A HET
SBS Chr9 7583795 G-A HET
SBS Chr9 18396348 G-C HET
SBS Chr10 6973003 G-A HET
SBS Chr10 12322955 G-C HET OsKitaake10g074000
SBS Chr12 8454505 G-A HET

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3649908 3649908 1
Deletion Chr12 5202962 5202962 1
Deletion Chr5 9130776 9130779 4
Deletion Chr2 16999738 16999749 12
Deletion Chr11 18329571 18329571 1
Deletion Chr10 23018206 23018206 1
Deletion Chr7 23450668 23450668 1
Deletion Chr6 27539059 27539060 2
Deletion Chr5 30226513 30226513 1
Deletion Chr2 30566259 30566261 3
Deletion Chr2 31438687 31438688 2
Deletion Chr1 34392558 34392558 1
Deletion Chr3 35369013 35369013 1
Deletion Chr1 41799370 41799370 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7612075 7612077 1
Insertion Chr3 29235197 29235199 1
Insertion Chr4 7932596 7932598 1
Insertion Chr4 34891663 34891666 2
Insertion Chr8 18641365 18641368 2
Insertion Chr11 9147442 9147444 1
Insertion Chr12 15394297 15394379 81
Insertion Chr3 37693215 37693218 2
Insertion Chr7 6809762 6809765 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 611653 861835
Inversion Chr7 5926842 5926917 OsKitaake07g071800
Inversion Chr2 22421881 22422171

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 17636552 Chr2 6552237

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9739911	T-A	HET
SBS	Chr1	14201479	T-C	HET		OsKitaake01g162600
SBS	Chr1	36616459	G-A	HET
SBS	Chr1	36616460	A-T	HET
SBS	Chr2	7867856	C-A	HET
SBS	Chr2	18926982	G-A	HOMO
SBS	Chr2	18926983	G-A	HOMO
SBS	Chr2	18926989	G-A	HOMO
SBS	Chr3	12912877	G-C	HET		OsKitaake03g173400
SBS	Chr3	18670544	A-C	HET
SBS	Chr4	9914731	C-G	HOMO
SBS	Chr4	14533311	A-C	HOMO
SBS	Chr5	12109577	G-A	HOMO
SBS	Chr5	12109578	T-G	HOMO
SBS	Chr5	18991523	A-C	HET		OsKitaake05g148500
SBS	Chr6	23869164	C-T	HET
SBS	Chr7	17189878	C-T	HET
SBS	Chr8	4303483	G-A	HET
SBS	Chr8	8500262	T-G	HOMO
SBS	Chr8	15078599	A-G	HOMO
SBS	Chr8	25340904	A-G	HOMO
SBS	Chr9	991774	G-A	HET
SBS	Chr9	7583795	G-A	HET
SBS	Chr9	18396348	G-C	HET
SBS	Chr10	6973003	G-A	HET
SBS	Chr10	12322955	G-C	HET		OsKitaake10g074000
SBS	Chr12	8454505	G-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3649908	3649908	1
Deletion	Chr12	5202962	5202962	1
Deletion	Chr5	9130776	9130779	4
Deletion	Chr2	16999738	16999749	12
Deletion	Chr11	18329571	18329571	1
Deletion	Chr10	23018206	23018206	1
Deletion	Chr7	23450668	23450668	1
Deletion	Chr6	27539059	27539060	2
Deletion	Chr5	30226513	30226513	1
Deletion	Chr2	30566259	30566261	3
Deletion	Chr2	31438687	31438688	2
Deletion	Chr1	34392558	34392558	1
Deletion	Chr3	35369013	35369013	1
Deletion	Chr1	41799370	41799370	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	611653	861835
Inversion	Chr7	5926842	5926917	OsKitaake07g071800
Inversion	Chr2	22421881	22422171

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes