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Mutant Information

Mutant Name	FN438-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN438-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2397677 C-A Hetero INTRON
SBS Chr1 6010069 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g076700
SBS Chr1 29153519 C-A Homo INTERGENIC
SBS Chr2 19999332 T-A Homo INTERGENIC
SBS Chr2 33829575 T-A Hetero INTERGENIC
SBS Chr3 5949162 T-C Hetero INTERGENIC
SBS Chr3 5949167 T-C Hetero INTERGENIC
SBS Chr3 5949175 A-T Hetero INTERGENIC
SBS Chr3 19515057 C-T Hetero INTERGENIC
SBS Chr3 26409324 G-T Hetero STOP_GAINED OsKitaake03g275500
SBS Chr3 28442205 C-T Hetero INTRON
SBS Chr4 12411791 C-G Hetero INTERGENIC
SBS Chr4 22514727 A-T Hetero INTRON
SBS Chr4 23874583 C-T Homo INTERGENIC
SBS Chr4 29142890 G-A Homo INTERGENIC
SBS Chr5 24513504 C-T Homo INTERGENIC
SBS Chr6 10840764 T-A Hetero INTERGENIC
SBS Chr6 13334887 T-A Hetero INTERGENIC
SBS Chr6 26613786 T-A Hetero INTERGENIC
SBS Chr6 26613787 G-A Hetero INTERGENIC
SBS Chr7 22924202 A-G Homo INTRON
SBS Chr7 24659637 T-A Hetero INTERGENIC
SBS Chr8 8475513 C-T Hetero INTERGENIC
SBS Chr8 10456089 A-G Hetero INTERGENIC
SBS Chr8 18013631 G-A Hetero INTERGENIC
SBS Chr8 27835300 T-G Hetero INTERGENIC
SBS Chr9 17230825 G-C Hetero INTERGENIC
SBS Chr9 22654773 C-T Hetero INTERGENIC
SBS Chr10 10674778 A-T Hetero INTRON
SBS Chr10 13137801 A-C Hetero INTERGENIC
SBS Chr11 2227221 C-T Hetero INTRON
SBS Chr11 9561125 G-A Hetero INTRON
SBS Chr11 12807423 C-T Hetero INTERGENIC
SBS Chr11 17063352 G-A Hetero INTRON
SBS Chr12 21175700 A-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1946436 1946442 6
Deletion Chr5 2078789 2078790 1
Deletion Chr12 3332926 3332927 1
Deletion Chr3 6280035 6280155 120
Deletion Chr7 6741853 6741858 5
Deletion Chr7 6830058 6830065 7
Deletion Chr3 10323302 10323303 1 OsKitaake03g140900
Deletion Chr12 13463846 13463847 1
Deletion Chr5 15149474 15149476 2
Deletion Chr10 16252862 16252865 3
Deletion Chr10 16834001 16887000 52999 7
Deletion Chr7 16902976 16902979 3
Deletion Chr2 23429427 23429436 9 OsKitaake02g229500
Deletion Chr12 25626979 25626984 5
Deletion Chr1 25844906 25844912 6
Deletion Chr2 26296330 26296338 8
Deletion Chr3 26298001 26319000 20999
Deletion Chr5 29359275 29359279 4 OsKitaake05g278700
Deletion Chr3 29827077 29827080 3 OsKitaake03g311800

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 14213718 14213723 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 10233428 10525116
Inversion Chr11 10233440 10525123

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10233426 Chr3 24860520
Translocation Chr11 10525115 Chr3 24860163

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2397677	C-A	Hetero	INTRON
SBS	Chr1	6010069	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g076700
SBS	Chr1	29153519	C-A	Homo	INTERGENIC
SBS	Chr2	19999332	T-A	Homo	INTERGENIC
SBS	Chr2	33829575	T-A	Hetero	INTERGENIC
SBS	Chr3	5949162	T-C	Hetero	INTERGENIC
SBS	Chr3	5949167	T-C	Hetero	INTERGENIC
SBS	Chr3	5949175	A-T	Hetero	INTERGENIC
SBS	Chr3	19515057	C-T	Hetero	INTERGENIC
SBS	Chr3	26409324	G-T	Hetero	STOP_GAINED	OsKitaake03g275500
SBS	Chr3	28442205	C-T	Hetero	INTRON
SBS	Chr4	12411791	C-G	Hetero	INTERGENIC
SBS	Chr4	22514727	A-T	Hetero	INTRON
SBS	Chr4	23874583	C-T	Homo	INTERGENIC
SBS	Chr4	29142890	G-A	Homo	INTERGENIC
SBS	Chr5	24513504	C-T	Homo	INTERGENIC
SBS	Chr6	10840764	T-A	Hetero	INTERGENIC
SBS	Chr6	13334887	T-A	Hetero	INTERGENIC
SBS	Chr6	26613786	T-A	Hetero	INTERGENIC
SBS	Chr6	26613787	G-A	Hetero	INTERGENIC
SBS	Chr7	22924202	A-G	Homo	INTRON
SBS	Chr7	24659637	T-A	Hetero	INTERGENIC
SBS	Chr8	8475513	C-T	Hetero	INTERGENIC
SBS	Chr8	10456089	A-G	Hetero	INTERGENIC
SBS	Chr8	18013631	G-A	Hetero	INTERGENIC
SBS	Chr8	27835300	T-G	Hetero	INTERGENIC
SBS	Chr9	17230825	G-C	Hetero	INTERGENIC
SBS	Chr9	22654773	C-T	Hetero	INTERGENIC
SBS	Chr10	10674778	A-T	Hetero	INTRON
SBS	Chr10	13137801	A-C	Hetero	INTERGENIC
SBS	Chr11	2227221	C-T	Hetero	INTRON
SBS	Chr11	9561125	G-A	Hetero	INTRON
SBS	Chr11	12807423	C-T	Hetero	INTERGENIC
SBS	Chr11	17063352	G-A	Hetero	INTRON
SBS	Chr12	21175700	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1946436	1946442	6
Deletion	Chr5	2078789	2078790	1
Deletion	Chr12	3332926	3332927	1
Deletion	Chr3	6280035	6280155	120
Deletion	Chr7	6741853	6741858	5
Deletion	Chr7	6830058	6830065	7
Deletion	Chr3	10323302	10323303	1	OsKitaake03g140900
Deletion	Chr12	13463846	13463847	1
Deletion	Chr5	15149474	15149476	2
Deletion	Chr10	16252862	16252865	3
Deletion	Chr10	16834001	16887000	52999	7
Deletion	Chr7	16902976	16902979	3
Deletion	Chr2	23429427	23429436	9	OsKitaake02g229500
Deletion	Chr12	25626979	25626984	5
Deletion	Chr1	25844906	25844912	6
Deletion	Chr2	26296330	26296338	8
Deletion	Chr3	26298001	26319000	20999
Deletion	Chr5	29359275	29359279	4	OsKitaake05g278700
Deletion	Chr3	29827077	29827080	3	OsKitaake03g311800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10233428	10525116
Inversion	Chr11	10233440	10525123

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes