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| Mutant Information |
|---|
| Mutant Name | FN4380-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4380-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11185437 | C-T | HET | ||
| SBS | Chr1 | 24941605 | C-T | HET | ||
| SBS | Chr1 | 37087138 | T-C | HOMO | ||
| SBS | Chr2 | 319164 | T-G | HET | ||
| SBS | Chr2 | 8917648 | A-G | HET | ||
| SBS | Chr2 | 13543165 | C-A | HET | ||
| SBS | Chr3 | 3575816 | A-C | HOMO | ||
| SBS | Chr3 | 22044873 | A-G | HET | ||
| SBS | Chr3 | 24919166 | T-C | HET | ||
| SBS | Chr4 | 2853563 | A-G | HET | ||
| SBS | Chr4 | 31872067 | C-T | HET | OsKitaake04g252800 | |
| SBS | Chr4 | 34415365 | C-A | HET | ||
| SBS | Chr5 | 3389336 | C-G | HET | ||
| SBS | Chr5 | 5029965 | G-A | HET | ||
| SBS | Chr5 | 5113177 | C-A | HET | ||
| SBS | Chr5 | 23897390 | C-T | HET | ||
| SBS | Chr6 | 20894701 | G-A | HOMO | ||
| SBS | Chr6 | 23358005 | A-G | HOMO | ||
| SBS | Chr7 | 24485564 | C-T | HET | ||
| SBS | Chr7 | 27213727 | T-C | HET | ||
| SBS | Chr8 | 4450007 | T-C | HET | ||
| SBS | Chr8 | 6148856 | T-C | HET | ||
| SBS | Chr8 | 21676143 | C-G | HET | ||
| SBS | Chr9 | 5325812 | G-A | HOMO | ||
| SBS | Chr9 | 5331680 | G-A | HOMO | ||
| SBS | Chr9 | 13000098 | T-C | HET | ||
| SBS | Chr11 | 7497031 | C-T | HET | ||
| SBS | Chr11 | 8356895 | G-T | HET | ||
| SBS | Chr11 | 20385650 | A-C | HET | ||
| SBS | Chr12 | 814889 | T-C | HOMO | ||
| SBS | Chr12 | 14394721 | C-T | HOMO |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 973352 | 973356 | 5 | OsKitaake01g011300 |
| Deletion | Chr5 | 2472239 | 2472250 | 12 | OsKitaake05g028300 |
| Deletion | Chr3 | 2800533 | 2800535 | 3 | |
| Deletion | Chr8 | 2969339 | 2969343 | 5 | |
| Deletion | Chr10 | 3449648 | 3449654 | 7 | |
| Deletion | Chr3 | 3607513 | 3607513 | 1 | OsKitaake03g050900 |
| Deletion | Chr9 | 5767583 | 5767584 | 2 | |
| Deletion | Chr12 | 10672998 | 10672998 | 1 | |
| Deletion | Chr5 | 14388154 | 14388154 | 1 | |
| Deletion | Chr1 | 15546105 | 15546105 | 1 | |
| Deletion | Chr12 | 15718839 | 15718839 | 1 | |
| Deletion | Chr1 | 17874033 | 17874033 | 1 | |
| Deletion | Chr3 | 18065530 | 18065530 | 1 | |
| Deletion | Chr11 | 20351952 | 20351957 | 6 | |
| Deletion | Chr1 | 22919251 | 22919251 | 1 | |
| Deletion | Chr8 | 24040897 | 24040897 | 1 | |
| Deletion | Chr11 | 27430182 | 27430182 | 1 | |
| Deletion | Chr8 | 28794456 | 28794456 | 1 | |
| Deletion | Chr2 | 34613830 | 34613830 | 1 | |
| Deletion | Chr4 | 36451417 | 36451417 | 1 | |
| Deletion | Chr3 | 37711825 | 37711825 | 1 |
Insertions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 34177566 | 34177568 | 1 | |
| Insertion | Chr3 | 4089967 | 4089969 | 1 | |
| Insertion | Chr3 | 25194401 | 25194403 | 1 | |
| Insertion | Chr11 | 24424649 | 24424651 | 1 | |
| Insertion | Chr1 | 4300768 | 4300772 | 3 | OsKitaake01g057300  |
| Insertion | Chr3 | 36351850 | 36351852 | 1 | OsKitaake03g403300 |
| Insertion | Chr9 | 19991864 | 19991869 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 6140168 | 6140426 | |
| Inversion | Chr6 | 28569589 | 28569661 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 7234970 | Chr1 | 11948678 | |
| Translocation | Chr5 | 7234979 | Chr1 | 11949077 |