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Mutant Information

Mutant Name	FN4385-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4385-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41122183 T-C HOMO
SBS Chr2 7201291 T-C HET
SBS Chr2 9202706 C-T HOMO
SBS Chr3 2741227 G-A HET
SBS Chr3 8268664 G-A HOMO
SBS Chr3 9368645 G-A HET
SBS Chr3 19685264 C-G HET
SBS Chr4 23364040 C-T HET
SBS Chr4 25425410 A-T HET
SBS Chr4 36099069 G-T HET
SBS Chr6 1337476 A-G HET
SBS Chr6 6935265 A-T HET OsKitaake06g089900
SBS Chr7 4915659 G-A HET
SBS Chr7 21359645 G-C HET
SBS Chr9 8829720 C-A HET
SBS Chr10 892753 G-A HET
SBS Chr10 7953102 T-C HOMO
SBS Chr10 7953103 G-A HOMO
SBS Chr11 4494352 T-G HET
SBS Chr11 19081011 C-T HET
SBS Chr11 29173292 T-A HET

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 5297001 5603000 306000 17
Deletion Chr4 5747911 5747911 1
Deletion Chr3 6651638 6651638 1
Deletion Chr7 6728555 6728555 1
Deletion Chr9 9390572 9390582 11
Deletion Chr7 10581078 10581108 31
Deletion Chr1 17101226 17101236 11
Deletion Chr6 22890643 22890643 1
Deletion Chr2 27145137 27145142 6
Deletion Chr5 30131092 30131445 354
Deletion Chr3 30335848 30335848 1
Deletion Chr3 32267200 32267200 1
Deletion Chr1 35027877 35027877 1
Deletion Chr4 35676952 35676952 1

Insertions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6756543 6756545 1
Insertion Chr2 15738875 15738877 1
Insertion Chr3 2395107 2395109 1
Insertion Chr3 6948028 6948030 1
Insertion Chr3 10293508 10293510 1
Insertion Chr3 16772105 16772107 1
Insertion Chr5 8840653 8840655 1
Insertion Chr6 19563883 19563886 2
Insertion Chr7 27517427 27517429 1
Insertion Chr8 24614567 24614569 1
Insertion Chr8 25094993 25094995 1
Insertion Chr9 1034340 1034342 1
Insertion Chr10 15738134 15738136 1
Insertion Chr11 1308567 1308569 1
Insertion Chr11 21940263 21940265 1
Insertion Chr12 414057 414059 1
Insertion Chr7 13051363 13051365 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1395357 1395498
Inversion Chr9 12042497 12042706

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2448877 Chr1 26273530
Translocation Chr8 23717172 Chr2 36595083 OsKitaake02g389300
Translocation Chr2 35394728 Chr1 32169132

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41122183	T-C	HOMO
SBS	Chr2	7201291	T-C	HET
SBS	Chr2	9202706	C-T	HOMO
SBS	Chr3	2741227	G-A	HET
SBS	Chr3	8268664	G-A	HOMO
SBS	Chr3	9368645	G-A	HET
SBS	Chr3	19685264	C-G	HET
SBS	Chr4	23364040	C-T	HET
SBS	Chr4	25425410	A-T	HET
SBS	Chr4	36099069	G-T	HET
SBS	Chr6	1337476	A-G	HET
SBS	Chr6	6935265	A-T	HET		OsKitaake06g089900
SBS	Chr7	4915659	G-A	HET
SBS	Chr7	21359645	G-C	HET
SBS	Chr9	8829720	C-A	HET
SBS	Chr10	892753	G-A	HET
SBS	Chr10	7953102	T-C	HOMO
SBS	Chr10	7953103	G-A	HOMO
SBS	Chr11	4494352	T-G	HET
SBS	Chr11	19081011	C-T	HET
SBS	Chr11	29173292	T-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	5297001	5603000	306000	17
Deletion	Chr4	5747911	5747911	1
Deletion	Chr3	6651638	6651638	1
Deletion	Chr7	6728555	6728555	1
Deletion	Chr9	9390572	9390582	11
Deletion	Chr7	10581078	10581108	31
Deletion	Chr1	17101226	17101236	11
Deletion	Chr6	22890643	22890643	1
Deletion	Chr2	27145137	27145142	6
Deletion	Chr5	30131092	30131445	354
Deletion	Chr3	30335848	30335848	1
Deletion	Chr3	32267200	32267200	1
Deletion	Chr1	35027877	35027877	1
Deletion	Chr4	35676952	35676952	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1395357	1395498
Inversion	Chr9	12042497	12042706

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes